Transcriptome dynamics of a desert poplar (Populus pruinosa) in response to continuous salinity stress

Analysis of the barley leaf transcriptome under salinity stress using mRNA-Seq

(2013) Mark Ziemann et al.   ACTA PHYSIOLOGIAE PLANTARUM

Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants

(2013) Vicent Arbona et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Rapidly Evolving Genes and Stress Adaptation of Two Desert Poplars, Populus euphratica and P. pruinosa

(2013) Jian Zhang et al.   PLoS One

The salt-responsive transcriptome of Populus simonii×Populus nigra via DGE

(2012) Su Chen et al.   GENE

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Membrane Transport, Sensing and Signaling in Plant Adaptation to Environmental Stress

(2011) A. Conde et al.   PLANT AND CELL PHYSIOLOGY

Genetic Differentiation and Delimitation between Ecologically Diverged Populus euphratica and P. pruinosa

(2011) Juan Wang et al.   PLoS One

Comparative study of transcriptional and physiological responses to salinity stress in two contrasting Populus alba L. genotypes

(2011) I. Beritognolo et al.   TREE PHYSIOLOGY

Genome-scale transcriptome analysis of the desert poplar, Populus euphratica

(2011) Q. Qiu et al.   TREE PHYSIOLOGY

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

(2010) James H Bullard et al.   BMC BIOINFORMATICS

Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms

(2010) Dennis Janz et al.   BMC PLANT BIOLOGY

‘Omics’ analyses of regulatory networks in plant abiotic stress responses

(2010) Kaoru Urano et al.   CURRENT OPINION IN PLANT BIOLOGY

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies

(2010) Z. Jiang et al.   NUCLEIC ACIDS RESEARCH

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

Linking the Salt Transcriptome with Physiological Responses of a Salt-Resistant Populus Species as a Strategy to Identify Genes Important for Stress Acclimation

(2010) M. Brinker et al.   PLANT PHYSIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity

(2009) Ikuo Uchiyama et al.   NUCLEIC ACIDS RESEARCH

Molecular characterization of putative vacuolar NHX-type Na+/H+exchanger genes from the salt-resistant treePopulus euphratica

(2009) Chu-Yu Ye et al.   PHYSIOLOGIA PLANTARUM

Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs

(2009) David Meiri et al.   PLANT JOURNAL

Enhanced Tolerance to Chilling Stress in OsMYB3R-2 Transgenic Rice Is Mediated by Alteration in Cell Cycle and Ectopic Expression of Stress Genes

(2009) Q. Ma et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

NaCl-Induced Alternations of Cellular and Tissue Ion Fluxes in Roots of Salt-Resistant and Salt-Sensitive Poplar Species

(2008) J. Sun et al.   PLANT PHYSIOLOGY