Rapidly Evolving Genes and Stress Adaptation of Two Desert Poplars, Populus euphratica and P. pruinosa

Chestnut resistance to the blight disease: insights from transcriptome analysis

(2012) Abdelali Barakat et al.   BMC PLANT BIOLOGY

Transcriptome Characterization and Sequencing-Based Identification of Salt-Responsive Genes in Millettia pinnata, a Semi-Mangrove Plant

(2012) J. Huang et al.   DNA RESEARCH

Life at the extreme: lessons from the genome

(2012) Dong-Ha Oh et al.   GENOME BIOLOGY

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

A transcriptomic scan for positively selected genes in two closely related marine fishes: Sebastes caurinus and S. rastrelliger

(2011) Joseph Heras et al.   Marine Genomics

Transcriptome sequencing of a highly salt tolerant mangrove species Sonneratia alba using Illumina platform

(2011) Sufang Chen et al.   Marine Genomics

Genetic Differentiation and Delimitation between Ecologically Diverged Populus euphratica and P. pruinosa

(2011) Juan Wang et al.   PLoS One

Genome-scale transcriptome analysis of the desert poplar, Populus euphratica

(2011) Q. Qiu et al.   TREE PHYSIOLOGY

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

(2010) AXEL KÜNSTNER et al.   MOLECULAR ECOLOGY

Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow

(2010) JOCHEN B. W. WOLF et al.   MOLECULAR ECOLOGY

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

(2010) K. R. ELMER et al.   MOLECULAR ECOLOGY

A tomato glutaredoxin gene SlGRX1 regulates plant responses to oxidative, drought and salt stresses

(2010) Yushuang Guo et al.   PLANTA

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

The ubiquitin–26S proteasome system at the nexus of plant biology

(2009) Richard D. Vierstra   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Harnessing genomics for evolutionary insights

(2009) Antonis Rokas et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

(2009) Adrian M. Altenhoff et al.   PLoS Computational Biology

Comparative genomics and the study of evolution by natural selection

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS