Engineering plants for tomorrow: how high-throughput phenotyping is contributing to the development of better crops

Moderate to severe water limitation differentially affects the phenome and ionome of Arabidopsis

(2017) Lucia M. Acosta-Gamboa et al.   FUNCTIONAL PLANT BIOLOGY

The ETH field phenotyping platform FIP: a cable-suspended multi-sensor system

(2017) Norbert Kirchgessner et al.   FUNCTIONAL PLANT BIOLOGY

A “Do-It-Yourself” phenotyping system: measuring growth and morphology throughout the diel cycle in rosette shaped plants

(2017) Andrei Dobrescu et al.   Plant Methods

AutoRoot: open-source software employing a novel image analysis approach to support fully-automated plant phenotyping

(2017) Michael P. Pound et al.   Plant Methods

An Automated Method for High-Throughput Screening of Arabidopsis Rosette Growth in Multi-Well Plates and Its Validation in Stress Conditions

(2017) Nuria De Diego et al.   Frontiers in Plant Science

PlantCV v2: Image analysis software for high-throughput plant phenotyping

(2017) Malia A. Gehan et al.   PeerJ

Regression Algorithms in Hyperspectral Data Analysis for Meat Quality Detection and Evaluation

(2016) Ting-Tiao Pan et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Image Harvest: an open-source platform for high-throughput plant image processing and analysis

(2016) Avi C. Knecht et al.   JOURNAL OF EXPERIMENTAL BOTANY

Application of independent components analysis with the JADE algorithm and NIR hyperspectral imaging for revealing food adulteration

(2016) Puneet Mishra et al.   JOURNAL OF FOOD ENGINEERING

Heterodera glycines cysts contain an extensive array of endoproteases as well as inhibitors of proteases in H. glycines and Meloidogyne incognita infective juvenile stages

(2016) Edward P. Masler et al.   NEMATOLOGY

Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping

(2016) Nadia Al-Tamimi et al.   Nature Communications

High-Throughput Non-destructive Phenotyping of Traits that Contribute to Salinity Tolerance in Arabidopsis thaliana

(2016) Mariam Awlia et al.   Frontiers in Plant Science

MultispeQ Beta: a tool for large-scale plant phenotyping connected to the open PhotosynQ network

(2016) Sebastian Kuhlgert et al.   Royal Society Open Science

Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

(2015) Noah Fahlgren et al.   CURRENT OPINION IN PLANT BIOLOGY

Simulating the impact of extreme heat and frost events on wheat crop production: A review

(2015) K.M. Barlow et al.   FIELD CROPS RESEARCH

LeasyScan: a novel concept combining 3D imaging and lysimetry for high-throughput phenotyping of traits controlling plant water budget

(2015) Vincent Vadez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Role of dioxygenase α-DOX2 and SA in basal response and in hexanoic acid-induced resistance of tomato (Solanum lycopersicum) plants against Botrytis cinerea

(2015) Carlos Angulo et al.   JOURNAL OF PLANT PHYSIOLOGY

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria

(2015) Noah Fahlgren et al.   Molecular Plant

HyperART: non-invasive quantification of leaf traits using hyperspectral absorption-reflectance-transmittance imaging

(2015) Sergej Bergsträsser et al.   Plant Methods

Integrating Image-Based Phenomics and Association Analysis to Dissect the Genetic Architecture of Temporal Salinity Responses in Rice

(2015) Malachy T. Campbell et al.   PLANT PHYSIOLOGY

Recent applications of hyperspectral imaging in microbiology

(2015) Aoife A. Gowen et al.   TALANTA

Shared and unique responses of plants to multiple individual stresses and stress combinations: physiological and molecular mechanisms

(2015) Prachi Pandey et al.   Frontiers in Plant Science

Advanced phenotyping and phenotype data analysis for the study of plant growth and development

(2015) Md. Matiur Rahaman et al.   Frontiers in Plant Science

Applying high-throughput phenotyping to plant–insect interactions: picturing more resistant crops

(2015) Fiona L Goggin et al.   Current Opinion in Insect Science

Metro Maps of Plant Disease Dynamics—Automated Mining of Differences Using Hyperspectral Images

(2015) Mirwaes Wahabzada et al.   PLoS One

DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots

(2015) Olga Symonova et al.   PLoS One

Phenotyping and beyond: modelling the relationships between traits

(2014) Christine Granier et al.   CURRENT OPINION IN PLANT BIOLOGY

A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis

(2014) R. Slovak et al.   PLANT CELL

Dissecting the Phenotypic Components of Crop Plant Growth and Drought Responses Based on High-Throughput Image Analysis

(2014) Dijun Chen et al.   PLANT CELL

High-Throughput Phenotyping to Detect Drought Tolerance QTL in Wild Barley Introgression Lines

(2014) Nora Honsdorf et al.   PLoS One

Development of a Wireless Computer Vision Instrument to Detect Biotic Stress in Wheat

(2014) Joaquin Casanova et al.   SENSORS

Integrating SOMs and a Bayesian Classifier for Segmenting Diseased Plants in Uncontrolled Environments

(2014) Deny Lizbeth Hernández-Rabadán et al.   TheScientificWorldJOURNAL

Image-based phenotyping for non-destructive screening of different salinity tolerance traits in rice

(2014) Aris Hairmansis et al.   Rice

Development and evaluation of a field-based high-throughput phenotyping platform

(2013) Pedro Andrade-Sanchez et al.   FUNCTIONAL PLANT BIOLOGY

Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity

(2013) Sébastien Tisné et al.   PLANT JOURNAL

Delivering high-resolution landmarks using inkjet micropatterning for spatial monitoring of leaf expansion

(2013) Lisheng Wang et al.   Plant Methods

An online database for plant image analysis software tools

(2013) Guillaume Lobet et al.   Plant Methods

Leaf-galling phylloxera on grapes reprograms host metabolism and morphology

(2013) P. D. Nabity et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop improvement

(2013) Joshua N. Cobb et al.   THEORETICAL AND APPLIED GENETICS

Hyperspectral imaging for small-scale analysis of symptoms caused by different sugar beet diseases

(2012) Anne-Katrin Mahlein et al.   Plant Methods

Loss of Function of FATTY ACID DESATURASE7 in Tomato Enhances Basal Aphid Resistance in a Salicylate-Dependent Manner

(2012) C. A. Avila et al.   PLANT PHYSIOLOGY

A Comparative Study on Application of Computer Vision and Fluorescence Imaging Spectroscopy for Detection of Huanglongbing Citrus Disease in the USA and Brazil

(2012) Caio B. Wetterich et al.   Journal of Spectroscopy

Molecular Bases of Plant Resistance to Arthropods

(2011) C. Michael Smith et al.   Annual Review of Entomology

Spatially discriminating Russian wheat aphid induced plant stress from other wheat stressing factors

(2011) Georges F. Backoulou et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Potential of field hyperspectral imaging as a non destructive method to assess leaf nitrogen content in Wheat

(2011) Nathalie Vigneau et al.   FIELD CROPS RESEARCH

Survival and growth of Arabidopsis plants given limited water are not equal

(2011) Aleksandra Skirycz et al.   NATURE BIOTECHNOLOGY

A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects

(2011) Samuel Arvidsson et al.   NEW PHYTOLOGIST

Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways

(2011) PAVEL I. KERCHEV et al.   PLANT CELL AND ENVIRONMENT

The potential of automatic methods of classification to identify leaf diseases from multispectral images

(2011) Sabine D. Bauer et al.   PRECISION AGRICULTURE

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Early detection and classification of plant diseases with Support Vector Machines based on hyperspectral reflectance

(2010) T. Rumpf et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Plant Disease Severity Estimated Visually, by Digital Photography and Image Analysis, and by Hyperspectral Imaging

(2010) C. H. Bock et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Phenomics: the next challenge

(2010) David Houle et al.   NATURE REVIEWS GENETICS

Climate change and drought: a risk assessment of crop-yield impacts

(2009) Y Li et al.   CLIMATE RESEARCH

A new screening method for osmotic component of salinity tolerance in cereals using infrared thermography

(2009) Xavier R. R. Sirault et al.   FUNCTIONAL PLANT BIOLOGY

Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance inArabidopsis thalianaand other rosette plants

(2009) Marcus Jansen et al.   FUNCTIONAL PLANT BIOLOGY

Indirect suppression of photosynthesis on individual leaves by arthropod herbivory

(2008) Paul D. Nabity et al.   ANNALS OF BOTANY

An image-processing based algorithm to automatically identify plant disease visual symptoms

(2008) A. Camargo et al.   BIOSYSTEMS ENGINEERING

Pharmaceutical applications of vibrational chemical imaging and chemometrics: A review

(2008) C. Gendrin et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

Quantifying the three main components of salinity tolerance in cereals

(2008) KARTHIKA RAJENDRAN et al.   PLANT CELL AND ENVIRONMENT