A “Do-It-Yourself” phenotyping system: measuring growth and morphology throughout the diel cycle in rosette shaped plants

Multi-scale modelling to synergise Plant Systems Biology and Crop Science

(2017) Yin Hoon Chew et al.   FIELD CROPS RESEARCH

Rubisco small subunits from the unicellular green alga Chlamydomonas complement Rubisco-deficient mutants of Arabidopsis

(2017) Nicky Atkinson et al.   NEW PHYTOLOGIST

Phenotiki: an open software and hardware platform for affordable and easy image-based phenotyping of rosette-shaped plants

(2017) Massimo Minervini et al.   PLANT JOURNAL

rosettR: protocol and software for seedling area and growth analysis

(2017) Filipa Tomé et al.   Plant Methods

Circadian, Carbon, and Light Control of Expansion Growth and Leaf Movement

(2017) Federico Apelt et al.   PLANT PHYSIOLOGY

Image Analysis in Plant Sciences: Publish Then Perish

(2017) Guillaume Lobet   TRENDS IN PLANT SCIENCE

Phenomics for photosynthesis, growth and reflectance in Arabidopsis thaliana reveals circadian and long-term fluctuations in heritability

(2016) Pádraic J. Flood et al.   Plant Methods

High-Throughput Non-destructive Phenotyping of Traits that Contribute to Salinity Tolerance in Arabidopsis thaliana

(2016) Mariam Awlia et al.   Frontiers in Plant Science

Quantitative monitoring of Arabidopsis thaliana growth and development using high-throughput plant phenotyping

(2016) Daniel Arend et al.   Scientific Data

Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

(2015) Noah Fahlgren et al.   CURRENT OPINION IN PLANT BIOLOGY

Multi-modality imagery database for plant phenotyping

(2015) Jeffrey A. Cruz et al.   MACHINE VISION AND APPLICATIONS

Carbon partitioning inArabidopsis thalianais a dynamic process controlled by the plants metabolic status and its circadian clock

(2015) Katharina Kölling et al.   PLANT CELL AND ENVIRONMENT

Plants in silico : why, why now and what?-an integrative platform for plant systems biology research

(2015) Xin-Guang Zhu et al.   PLANT CELL AND ENVIRONMENT

Phytotyping4D: a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth

(2015) Federico Apelt et al.   PLANT JOURNAL

Automated phenotyping of plant shoots using imaging methods for analysis of plant stress responses – a review

(2015) Jan F Humplík et al.   Plant Methods

Correction for Chew et al., Multiscale digitalArabidopsispredicts individual organ and whole-organism growth

(2015)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The relationship between leaf area growth and biomass accumulation in Arabidopsis thaliana

(2015) Sarathi M. Weraduwage et al.   Frontiers in Plant Science

Differentially Phased Leaf Growth and Movements in Arabidopsis Depend on Coordinated Circadian and Light Regulation

(2014) T. Dornbusch et al.   PLANT CELL

High-resolution time-resolved imaging ofin vitroArabidopsis rosette growth

(2014) Stijn Dhondt et al.   PLANT JOURNAL

Easy Leaf Area: Automated Digital Image Analysis for Rapid and Accurate Measurement of Leaf Area

(2014) Hsien Ming Easlon et al.   Applications in Plant Sciences

Functional approach to high-throughput plant growth analysis

(2013) Oliver L Tessmer et al.   BMC Systems Biology

A segmentation procedure using colour features applied to images of Arabidopsis thaliana

(2013) Ruben Ispiryan et al.   FUNCTIONAL PLANT BIOLOGY

Arabidopsis Coordinates the Diurnal Regulation of Carbon Allocation and Growth across a Wide Range of Photoperiods

(2013) Ronan Sulpice et al.   Molecular Plant

Antiphase Light and Temperature Cycles Affect PHYTOCHROME B-Controlled Ethylene Sensitivity and Biosynthesis, Limiting Leaf Movement and Growth of Arabidopsis

(2013) R. Bours et al.   PLANT PHYSIOLOGY

RBCS1A and RBCS3B, two major members within the Arabidopsis RBCS multigene family, function to yield sufficient Rubisco content for leaf photosynthetic capacity

(2012) Masanori Izumi et al.   JOURNAL OF EXPERIMENTAL BOTANY

OSCILLATOR: A system for analysis of diurnal leaf growth using infrared photography combined with wavelet transformation

(2012) Ralph Bours et al.   Plant Methods

PhenoPhyte: a flexible affordable method to quantify 2D phenotypes from imagery

(2012) Jason M Green et al.   Plant Methods

Rosette Tracker: An Open Source Image Analysis Tool for Automatic Quantification of Genotype Effects

(2012) J. De Vylder et al.   PLANT PHYSIOLOGY

Natural Genetic Variation for Growth and Development Revealed by High-Throughput Phenotyping in Arabidopsis thaliana

(2012) Xu Zhang et al.   G3-Genes Genomes Genetics

Survival and growth of Arabidopsis plants given limited water are not equal

(2011) Aleksandra Skirycz et al.   NATURE BIOTECHNOLOGY

A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects

(2011) Samuel Arvidsson et al.   NEW PHYTOLOGIST

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

(2010) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance inArabidopsis thalianaand other rosette plants

(2009) Marcus Jansen et al.   FUNCTIONAL PLANT BIOLOGY