AutoRoot: open-source software employing a novel image analysis approach to support fully-automated plant phenotyping

The Microphenotron: a robotic miniaturized plant phenotyping platform with diverse applications in chemical biology

(2017) Thomas Burrell et al.   Plant Methods

Machine Learning and Computer Vision System for Phenotype Data Acquisition and Analysis in Plants

(2016) Pedro Navarro et al.   SENSORS

Machine Learning for Plant Phenotyping Needs Image Processing

(2016) Sotirios A. Tsaftaris et al.   TRENDS IN PLANT SCIENCE

Machine Learning for High-Throughput Stress Phenotyping in Plants

(2016) Arti Singh et al.   TRENDS IN PLANT SCIENCE

Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

(2015) Noah Fahlgren et al.   CURRENT OPINION IN PLANT BIOLOGY

RootGraph: a graphic optimization tool for automated image analysis of plant roots

(2015) Jinhai Cai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat

(2015) Jonathan A. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Leaf segmentation in plant phenotyping: a collation study

(2015) Hanno Scharr et al.   MACHINE VISION AND APPLICATIONS

Deep learning

(2015) Yann LeCun et al.   NATURE

Plant phenotyping: from bean weighing to image analysis

(2015) Achim Walter et al.   Plant Methods

Glutamate signalling via a MEKK1 kinase-dependent pathway induces changes in Arabidopsis root architecture

(2013) Brian G. Forde et al.   PLANT JOURNAL

RootNav: Navigating Images of Complex Root Architectures

(2013) M. P. Pound et al.   PLANT PHYSIOLOGY

Cell to whole-plant phenotyping: the best is yet to come

(2013) Stijn Dhondt et al.   TRENDS IN PLANT SCIENCE

GiA Roots: software for the high throughput analysis of plant root system architecture

(2012) Taras Galkovskyi et al.   BMC PLANT BIOLOGY

What lies beneath: underlying assumptions in bioimage analysis

(2012) Tony P. Pridmore et al.   TRENDS IN PLANT SCIENCE

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Shovelomics: high throughput phenotyping of maize (Zea mays L.) root architecture in the field

(2010) Samuel Trachsel et al.   PLANT AND SOIL

High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool

(2009) A. French et al.   PLANT PHYSIOLOGY