Using Next-Generation Sequencing to Assist a Conservation Hatchery: a Single-Nucleotide Polymorphism Panel for the Genetic Management of Endangered Delta Smelt

Simulation Study on Parentage Analysis with SNPs in the Japanese Black Cattle Population

(2014) Takeshi Honda et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

A High Throughput Single Nucleotide Polymorphism Multiplex Assay for Parentage Assignment in New Zealand Sheep

(2014) Shannon M. Clarke et al.   PLoS One

A RAD-based linkage map and comparative genomics in the gudgeons (genus Gnathopogon, Cyprinidae)

(2013) Ryo Kakioka et al.   BMC GENOMICS

A validation of parentage-based tagging using hatchery steelhead in the Snake River basin

(2013) Craig A. Steele et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Development, inheritance and evaluation of 55 novel single nucleotide polymorphism markers for parentage assignment in the Pacific oyster (Crassostrea gigas)

(2013) Yu-Lin Jin et al.   Genes & Genomics

Turbidity and Salinity Affect Feeding Performance and Physiological Stress in the Endangered Delta Smelt

(2013) Matthias Hasenbein et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data

(2013) Helen Senn et al.   MOLECULAR ECOLOGY

Large-scale parentage analysis reveals reproductive patterns and heritability of spawn timing in a hatchery population of steelhead (Oncorhynchus mykiss)

(2013) Alicia Abadía-Cardoso et al.   MOLECULAR ECOLOGY

Aquaculture Methods for a Genetically Managed Population of Endangered Delta Smelt

(2013) Joan C. Lindberg et al.   NORTH AMERICAN JOURNAL OF AQUACULTURE

Comparison of microsatellite and SNP DNA markers for pedigree assignment in Black Tiger shrimp,Penaeus monodon

(2012) Melony J Sellars et al.   AQUACULTURE RESEARCH

Genetic evaluation of the initiation of a captive population: the general approach and a case study in the endangered pallid sturgeon (Scaphirhynchus albus)

(2012) Melody J. Saltzgiver et al.   CONSERVATION GENETICS

Genetic diversity and parentage in farmer varieties of cacao (Theobroma cacao L.) from Honduras and Nicaragua as revealed by single nucleotide polymorphism (SNP) markers

(2012) Kun Ji et al.   GENETIC RESOURCES AND CROP EVOLUTION

Effective size of a wild salmonid population is greatly reduced by hatchery supplementation

(2012) M R Christie et al.   HEREDITY

Conspecifics can be aliens too: A review of effects of restocking practices in vertebrates

(2012) Jocelyn Champagnon et al.   JOURNAL FOR NATURE CONSERVATION

A Comparison of Strategies for Selecting Breeding Pairs to Maximize Genetic Diversity Retention in Managed Populations

(2012) Jamie A. Ivy et al.   JOURNAL OF HEREDITY

Evaluating the Performance of Captive Breeding Techniques for Conservation Hatcheries: A Case Study of the Delta Smelt Captive Breeding Program

(2012) Kathleen M. Fisch et al.   JOURNAL OF HEREDITY

Special features of RAD Sequencing data: implications for genotyping

(2012) John W. Davey et al.   MOLECULAR ECOLOGY

Molecular Parentage Analysis Is Essential in Breeding Asian Seabass

(2012) Peng Liu et al.   PLoS One

An Investigation of Factors Affecting the Decline of Delta Smelt (Hypomesus transpacificus) in the Sacramento-San Joaquin Estuary

(2012) William J. Miller et al.   REVIEWS IN FISHERIES SCIENCE

Synergies between climate anomalies and hydrological modifications facilitate estuarine biotic invasions

(2011) Monika Winder et al.   ECOLOGY LETTERS

Statistical Models of Temperature in the Sacramento–San Joaquin Delta Under Climate-Change Scenarios and Ecological Implications

(2011) R. Wayne Wagner et al.   Estuaries and Coasts

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Unlocking the potential of genomic technologies for wildlife forensics

(2011) ROB OGDEN   Molecular Ecology Resources

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

(2011) LORENZ HAUSER et al.   Molecular Ecology Resources

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

(2011) J. E. SEEB et al.   Molecular Ecology Resources

Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne

(2011) W. F. Pfender et al.   THEORETICAL AND APPLIED GENETICS

Analysis of pelagic species decline in the upper San Francisco Estuary using multivariate autoregressive modeling (MAR)

(2010) Ralph Mac Nally et al.   ECOLOGICAL APPLICATIONS

Modeling the Effects of Future Outflow on the Abiotic Habitat of an Imperiled Estuarine Fish

(2010) Frederick Feyrer et al.   Estuaries and Coasts

Shifts in Zooplankton Community Structure: Implications for Food Web Processes in the Upper San Francisco Estuary

(2010) Monika Winder et al.   Estuaries and Coasts

Construction and Validation of Parentage Testing for Thoroughbred Horses by 53 Single Nucleotide Polymorphisms

(2010) Kei-ichi HIROTA et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Development of a 25-plex SNP assay for traceability in cattle

(2009) B. Karniol et al.   ANIMAL GENETICS

Minimizing genetic adaptation in captive breeding programs: A review

(2009) Sara E. Williams et al.   BIOLOGICAL CONSERVATION

Carry-over effect of captive breeding reduces reproductive fitness of wild-born descendants in the wild

(2009) H. Araki et al.   Biology Letters

Linking mechanistic and behavioral responses to sublethal esfenvalerate exposure in the endangered delta smelt; Hypomesus transpacificus (Fam. Osmeridae)

(2009) Richard E Connon et al.   BMC GENOMICS

Where are we in conservation genetics and where do we need to go?

(2009) Richard Frankham   CONSERVATION GENETICS

Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison

(2009) M Tokarska et al.   HEREDITY

Characterization of 24 microsatellite loci in delta smelt,Hypomesus transpacificus, and their cross-species amplification in two other smelt species of the Osmeridae family

(2009) KATHLEEN M. FISCH et al.   Molecular Ecology Resources

A practical guide to methods of parentage analysis

(2009) ADAM G. JONES et al.   Molecular Ecology Resources

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Estimation of the number of SNP genetic markers required for parentage verification

(2008) E. Baruch et al.   ANIMAL GENETICS

Mixed evidence for reduced local adaptation in wild salmon resulting from interbreeding with escaped farmed salmon: complexities in hybrid fitness

(2008) Dylan J. Fraser et al.   Evolutionary Applications

The number of single nucleotide polymorphisms and on-farm data required for whole-herd parentage testing in dairy cattle herds

(2008) P.J. Fisher et al.   JOURNAL OF DAIRY SCIENCE

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One