Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data

Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads

(2012) Z. Chong et al.   BIOINFORMATICS

RAD tag sequencing as a source of SNP markers in Cynara cardunculus L

(2012) Davide Scaglione et al.   BMC GENOMICS

The influence of mean climate trends and climate variance on beaver survival and recruitment dynamics

(2012) Ruairidh D. Campbell et al.   GLOBAL CHANGE BIOLOGY

A Global View of 54,001 Single Nucleotide Polymorphisms (SNPs) on the Illumina BovineSNP50 BeadChip and Their Transferability to Water Buffalo

(2012) Vanessa N. Michelizzi et al.   International Journal of Biological Sciences

Consistent divergence times and allele sharing measured from cross-species application of SNP chips developed for three domestic species

(2012) J. M. Miller et al.   Molecular Ecology Resources

RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays

(2012) STEPHEN J. AMISH et al.   Molecular Ecology Resources

De novo assembly and genotyping of variants using colored de Bruijn graphs

(2012) Zamin Iqbal et al.   NATURE GENETICS

The Development of a Genome Wide SNP Set for the Barnacle Goose Branta leucopsis

(2012) Rudy M. Jonker et al.   PLoS One

Paired-end RAD-seq for de novo assembly and marker design without available reference

(2011) Eva-Maria Willing et al.   BIOINFORMATICS

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

(2011) Robert HS Kraus et al.   BMC GENOMICS

More genetic data are needed before populations are mixed: response to ‘Sourcing Eurasian beaver Castor fiber stock for reintroductions in Great Britain and Western Europe’

(2011) Frank ROSELL et al.   MAMMAL REVIEW

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Unlocking the potential of genomic technologies for wildlife forensics

(2011) ROB OGDEN   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism

(2011) Simon W. Baxter et al.   PLoS One

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

LOCAS – A Low Coverage Assembly Tool for Resequencing Projects

(2011) Juliane D. Klein et al.   PLoS One

The use of cross-species genome-wide arrays to discover SNP markers for conservation genetics: a case study from Arabian and scimitar-horned oryx

(2011) Rob Ogden et al.   Conservation Genetics Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Assessment of the functionality of genome-wide canine SNP arrays and implications for canine disease association studies

(2010) X. Ke et al.   ANIMAL GENETICS

First set of microsatellite markers for genetic characterization of the Eurasian beaver (Castor fiber) based on tissue and hair samples

(2010) Christiane Frosch et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Sourcing Eurasian beaver Castor fiber stock for reintroductions in Great Britain and Western Europe

(2010) Duncan J. HALLEY   MAMMAL REVIEW

A genome-wide set of SNPs detects population substructure and long range linkage disequilibrium in wild sheep

(2010) J.M. MILLER et al.   Molecular Ecology Resources

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

(2009) Hindrik HD Kerstens et al.   BMC GENOMICS

Development of nine new microsatellite loci for the American beaver, Castor canadensis (Rodentia: Castoridae), and cross-species amplification in the European beaver, Castor fiber

(2009) KARLA PELZ-SERRANO et al.   Molecular Ecology Resources

A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds

(2009) James W. Kijas et al.   PLoS One

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Isolation and characterization of microsatellite loci in the beaver (Castor canadensis)

(2007) J. CRAWFORD et al.   Molecular Ecology Resources