Advances in whole-embryo imaging: a quantitative transition is underway

Near-Infrared Light Photocontrolled Targeting, Bioimaging, and Chemotherapy with Caged Upconversion Nanoparticles in Vitro and in Vivo

(2013) Yi-Hsin Chien et al.   ACS Nano

Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart

(2013) Sorin Pop et al.   BIOINFORMATICS

Fluorescent nanodiamond as a probe for the intercellular transport of proteins in vivo

(2013) Yung Kuo et al.   BIOMATERIALS

Specified Neural Progenitors Sort to Form Sharp Domains after Noisy Shh Signaling

(2013) Fengzhu Xiong et al.   CELL

Fluorescent proteins for live-cell imaging with super-resolution

(2013) Karin Nienhaus et al.   CHEMICAL SOCIETY REVIEWS

Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis

(2013) J. L. Moore et al.   DEVELOPMENT

Pulse propagation by a capacitive mechanism drives embryonic blood flow

(2013) H. Anton et al.   DEVELOPMENT

Raeppli: a whole-tissue labeling tool for live imaging of Drosophila development

(2013) O. Kanca et al.   DEVELOPMENT

Morphogen transport

(2013) P. Muller et al.   DEVELOPMENT

Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy

(2013) Fernando Amat et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Straight talk with...Doris Meder and Geert Van Minnebruggen

(2013)   NATURE MEDICINE

OpenSpinMicroscopy: an open-source integrated microscopy platform

(2013) Emilio J Gualda et al.   NATURE METHODS

OpenSPIM: an open-access light-sheet microscopy platform

(2013) Peter G Pitrone et al.   NATURE METHODS

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Near-infrared fluorescent proteins for multicolor in vivo imaging

(2013) Daria M Shcherbakova et al.   NATURE METHODS

Cell intercalation from top to bottom

(2013) Elise Walck-Shannon et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Two-photon excitation selective plane illumination microscopy (2PE-SPIM) of highly scattering samples: characterization and application

(2013) Zeno Lavagnino et al.   OPTICS EXPRESS

A Raman-based endoscopic strategy for multiplexed molecular imaging

(2013) C. L. Zavaleta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated Processing of Zebrafish Imaging Data: A Survey

(2013) Ralf Mikut et al.   Zebrafish

Fast functional imaging of multiple brain regions in intact zebrafish larvae using Selective Plane Illumination Microscopy

(2013) Thomas Panier et al.   Frontiers in Neural Circuits

Probing transcription factor diffusion dynamics in the living mammalian embryo with photoactivatable fluorescence correlation spectroscopy

(2013) Gurpreet Kaur et al.   Nature Communications

High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics

(2013) Benjamin Schmid et al.   Nature Communications

SHG nanoprobes: Advancing harmonic imaging in biology

(2012) William P. Dempsey et al.   BIOESSAYS

Noninvasive Imaging beyond the Diffraction Limit of 3D Dynamics in Thickly Fluorescent Specimens

(2012) Liang Gao et al.   CELL

Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo

(2012) Periklis Pantazis et al.   CELL CYCLE

Free Extracellular Diffusion Creates the Dpp Morphogen Gradient of the Drosophila Wing Disc

(2012) Shaohua Zhou et al.   CURRENT BIOLOGY

Developmental Bias in Cleavage-Stage Mouse Blastomeres

(2012) Inna Tabansky et al.   CURRENT BIOLOGY

Real-Time Background-Free Selective Imaging of Fluorescent Nanodiamonds in Vivo

(2012) Ryuji Igarashi et al.   NANO LETTERS

Clonally dominant cardiomyocytes direct heart morphogenesis

(2012) Vikas Gupta et al.   NATURE

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains

(2012) Olaf Ronneberger et al.   NATURE METHODS

Multicolor two-photon tissue imaging by wavelength mixing

(2012) Pierre Mahou et al.   NATURE METHODS

Biological imaging software tools

(2012) Kevin W Eliceiri et al.   NATURE METHODS

Multiview light-sheet microscope for rapid in toto imaging

(2012) Uros Krzic et al.   NATURE METHODS

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

(2012) Raju Tomer et al.   NATURE METHODS

Surface functionalization of barium titanate SHG nanoprobes for in vivo imaging in zebrafish

(2012) Jelena Čulić-Viskota et al.   Nature Protocols

Scanned light sheet microscopy with confocal slit detection

(2012) Eugen Baumgart et al.   OPTICS EXPRESS

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain

(2012) L. Silvestri et al.   OPTICS EXPRESS

PhOTO Zebrafish: A Transgenic Resource for In Vivo Lineage Tracing during Development and Regeneration

(2012) William P. Dempsey et al.   PLoS One

Multiscale diffusion in the mitotic Drosophila melanogaster syncytial blastoderm

(2012) B. R. Daniels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential Diffusivity of Nodal and Lefty Underlies a Reaction-Diffusion Patterning System

(2012) P. Muller et al.   SCIENCE

ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes

(2012) Kishore R. Mosaliganti et al.   PLoS Computational Biology

Deep-Tissue Photoacoustic Tomography of a Genetically Encoded Near-Infrared Fluorescent Probe

(2011) Grigory S. Filonov et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Upconverting Nanoparticles

(2011) Markus Haase et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Lineage mapping the pre-implantation mouse embryo by two-photon microscopy, new insights into the segregation of cell fates

(2011) Katie McDole et al.   DEVELOPMENTAL BIOLOGY

Toward high-content/high-throughput imaging and analysis of embryonic morphogenesis

(2011) Thai V. Truong et al.   GENESIS

Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein

(2011) Michele E. Auldridge et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bright and stable near-infrared fluorescent protein for in vivo imaging

(2011) Grigory S Filonov et al.   NATURE BIOTECHNOLOGY

Quantitative fluorescence imaging of protein diffusion and interaction in living cells

(2011) Jérémie Capoulade et al.   NATURE BIOTECHNOLOGY

Oct4 kinetics predict cell lineage patterning in the early mammalian embryo

(2011) Nicolas Plachta et al.   NATURE CELL BIOLOGY

Flybow: genetic multicolor cell labeling for neural circuit analysis in Drosophila melanogaster

(2011) Dafni Hadjieconomou et al.   NATURE METHODS

Deep and fast live imaging with two-photon scanned light-sheet microscopy

(2011) Thai V Truong et al.   NATURE METHODS

Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination

(2011) Thomas A Planchon et al.   NATURE METHODS

The properties and applications of nanodiamonds

(2011) Vadym N. Mochalin et al.   Nature Nanotechnology

Proteins on the move: insights gained from fluorescent protein technologies

(2011) Atsushi Miyawaki   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Far-Red Fluorescent Protein Excitable with Red Lasers for Flow Cytometry and Superresolution STED Nanoscopy

(2010) Kateryna S. Morozova et al.   BIOPHYSICAL JOURNAL

High Mobility of Bicoid Captured by Fluorescence Correlation Spectroscopy: Implication for the Rapid Establishment of Its Gradient

(2010) Asmahan Abu-Arish et al.   BIOPHYSICAL JOURNAL

Planar polarity of multiciliated ependymal cells involves the anterior migration of basal bodies regulated by non-muscle myosin II

(2010) Y. Hirota et al.   DEVELOPMENT

Lighting up developmental mechanisms: how fluorescence imaging heralded a new era

(2010) M. Mavrakis et al.   DEVELOPMENT

Reconstructing embryonic development

(2010) Khaled Khairy et al.   GENESIS

Scanning light-sheet microscopy in the whole mouse brain with HiLo background rejection

(2010) Jerome Mertz et al.   JOURNAL OF BIOMEDICAL OPTICS

In Vivo Imaging and Toxicity Assessments of Fluorescent Nanodiamonds inCaenorhabditis elegans

(2010) Nitin Mohan et al.   NANO LETTERS

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

Software for bead-based registration of selective plane illumination microscopy data

(2010) Stephan Preibisch et al.   NATURE METHODS

Near-infrared fluorescent proteins

(2010) Dmitry Shcherbo et al.   NATURE METHODS

Fast, high-contrast imaging of animal development with scanned light sheet–based structured-illumination microscopy

(2010) Philipp J Keller et al.   NATURE METHODS

Observation and control of blinking nitrogen-vacancy centres in discrete nanodiamonds

(2010) C. Bradac et al.   Nature Nanotechnology

Single Plane Illumination Fluorescence Correlation Spectroscopy (SPIM-FCS) probes inhomogeneous three-dimensional environments

(2010) Thorsten Wohland et al.   OPTICS EXPRESS

Dynamic Analysis of Vascular Morphogenesis Using Transgenic Quail Embryos

(2010) Yuki Sato et al.   PLoS One

Second harmonic generating (SHG) nanoprobes for in vivo imaging

(2010) P. Pantazis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy

(2010) N. Olivier et al.   SCIENCE

Optogenetic Control of Cardiac Function

(2010) A. B. Arrenberg et al.   SCIENCE

A Rapidly Maturing Far-Red Derivative of DsRed-Express2 for Whole-Cell Labeling

(2009) Rita L. Strack et al.   BIOCHEMISTRY

Autofluorescent Proteins with Excitation in the Optical Window for Intravital Imaging in Mammals

(2009) Michael Z. Lin et al.   CHEMISTRY & BIOLOGY

Infrared multiphoton microscopy: subcellular-resolved deep tissue imaging

(2009) Volker Andresen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Spindle alignment is achieved without rotation after the first cell cycle in Drosophila embryonic neuroblasts

(2009) E. Rebollo et al.   DEVELOPMENT

Non-blinking semiconductor nanocrystals

(2009) Xiaoyong Wang et al.   NATURE

Fgf8 morphogen gradient forms by a source-sink mechanism with freely diffusing molecules

(2009) Shuizi Rachel Yu et al.   NATURE

A 3D digital atlas of C. elegans and its application to single-cell analyses

(2009) Fuhui Long et al.   NATURE METHODS

Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation

(2009) Guy B Blanchard et al.   NATURE METHODS

Quantitative imaging of collective cell migration during Drosophila gastrulation: multiphoton microscopy and computational analysis

(2009) Willy Supatto et al.   Nature Protocols

Quantitative approaches in developmental biology

(2009) Andrew C. Oates et al.   NATURE REVIEWS GENETICS

Dynamic aberration correction for multiharmonic microscopy

(2009) Nicolas Olivier et al.   OPTICS LETTERS

Multiplexed imaging of surface enhanced Raman scattering nanotags in living mice using noninvasive Raman spectroscopy

(2009) C. L. Zavaleta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian Expression of Infrared Fluorescent Proteins Engineered from a Bacterial Phytochrome

(2009) X. Shu et al.   SCIENCE

An All-Optical Approach for Probing Microscopic Flows in Living Embryos

(2008) Willy Supatto et al.   BIOPHYSICAL JOURNAL

A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm

(2008) Charless C. Fowlkes et al.   CELL

Single-molecule and single-nanoparticle SERS: from fundamental mechanisms to biomedical applications

(2008) X.-M. Qian et al.   CHEMICAL SOCIETY REVIEWS

SERS—a single-molecule and nanoscale tool for bioanalytics

(2008) Janina Kneipp et al.   CHEMICAL SOCIETY REVIEWS

Dynamic Analyses of Drosophila Gastrulation Provide Insights into Collective Cell Migration

(2008) A. McMahon et al.   SCIENCE

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE

Upconversion fluorescence imaging of cells and small animals using lanthanide doped nanocrystals

(2007) D CHATTERJEE et al.   BIOMATERIALS