Toward high-content/high-throughput imaging and analysis of embryonic morphogenesis

Oct4 kinetics predict cell lineage patterning in the early mammalian embryo

(2011) Nicolas Plachta et al.   NATURE CELL BIOLOGY

Nodal Dependent Differential Localisation of Dishevelled-2 Demarcates Regions of Differing Cell Behaviour in the Visceral Endoderm

(2011) Georgios Trichas et al.   PLOS BIOLOGY

Cell Flow Reorients the Axis of Planar Polarity in the Wing Epithelium of Drosophila

(2010) Benoît Aigouy et al.   CELL

Stereotypical Cell Division Orientation Controls Neural Rod Midline Formation in Zebrafish

(2010) Elena Quesada-Hernández et al.   CURRENT BIOLOGY

FGF signal-dependent segregation of primitive endoderm and epiblast in the mouse blastocyst

(2010) Y. Yamanaka et al.   DEVELOPMENT

High-throughput in vivo vertebrate screening

(2010) Carlos Pardo-Martin et al.   NATURE METHODS

Software for bead-based registration of selective plane illumination microscopy data

(2010) Stephan Preibisch et al.   NATURE METHODS

CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging

(2010) Michael Held et al.   NATURE METHODS

Fast, high-contrast imaging of animal development with scanned light sheet–based structured-illumination microscopy

(2010) Philipp J Keller et al.   NATURE METHODS

Dynamic Analysis of Vascular Morphogenesis Using Transgenic Quail Embryos

(2010) Yuki Sato et al.   PLoS One

Origin and formation of the first two distinct cell types of the inner cell mass in the mouse embryo

(2010) S. A. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy

(2010) N. Olivier et al.   SCIENCE

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

Methods toward in vivo measurement of zebrafish epithelial and deep cell proliferation

(2009) Matteo Campana et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Quantitative in vivo imaging of entire embryos with Digital Scanned Laser Light Sheet Fluorescence Microscopy

(2009) Philipp J Keller et al.   CURRENT OPINION IN NEUROBIOLOGY

Selective plane illumination microscopy techniques in developmental biology

(2009) J. Huisken et al.   DEVELOPMENT

Cells Segmentation From 3-D Confocal Images of Early Zebrafish Embryogenesis

(2009) C. Zanella et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration

(2009) A.J. HAND et al.   JOURNAL OF MICROSCOPY

Long-Term, Six-Dimensional Live-Cell Imaging for the Mouse Preimplantation Embryo That Does Not Affect Full-Term Development

(2009) Kazuo YAMAGATA et al.   JOURNAL OF REPRODUCTION AND DEVELOPMENT

Versatile Synthesis and Rational Design of Caged Morpholinos

(2009) Xiaohu Ouyang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Cell shape changes indicate a role for extrinsic tensile forces in Drosophila germ-band extension

(2009) Lucy C. Butler et al.   NATURE CELL BIOLOGY

A 3D digital atlas of C. elegans and its application to single-cell analyses

(2009) Fuhui Long et al.   NATURE METHODS

Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation

(2009) Guy B Blanchard et al.   NATURE METHODS

Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues

(2009) Na Ji et al.   NATURE METHODS

Quantitative imaging of collective cell migration during Drosophila gastrulation: multiphoton microscopy and computational analysis

(2009) Willy Supatto et al.   Nature Protocols

Adaptive harmonic generation microscopy of mammalian embryos

(2009) Alexander Jesacher et al.   OPTICS LETTERS

Tracking in cell and developmental biology

(2009) Erik Meijering et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

A Caged Retinoic Acid for One- and Two-Photon Excitation in Zebrafish Embryos

(2008) Pierre Neveu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm

(2008) Charless C. Fowlkes et al.   CELL

Formation of the embryonic-abembryonic axis of the mouse blastocyst: relationships between orientation of early cleavage divisions and pattern of symmetric/asymmetric divisions

(2008) M. Bischoff et al.   DEVELOPMENT

Dynamic Fgf signaling couples morphogenesis and migration in the zebrafish lateral line primordium

(2008) V. Lecaudey et al.   DEVELOPMENT

The Endoderm of the Mouse Embryo Arises by Dynamic Widespread Intercalation of Embryonic and Extraembryonic Lineages

(2008) Gloria S. Kwon et al.   DEVELOPMENTAL CELL

Tissue Deformation Modulates Twist Expression to Determine Anterior Midgut Differentiation in Drosophila Embryos

(2008) Nicolas Desprat et al.   DEVELOPMENTAL CELL

Discrete rearranging disordered patterns, part I: Robust statistical tools in two or three dimensions

(2008) F. Graner et al.   EUROPEAN PHYSICAL JOURNAL E

Pulsed contractions of an actin–myosin network drive apical constriction

(2008) Adam C. Martin et al.   NATURE

Nature and anisotropy of cortical forces orienting Drosophila tissue morphogenesis

(2008) Matteo Rauzi et al.   NATURE CELL BIOLOGY

High-speed, low-photodamage nonlinear imaging using passive pulse splitters

(2008) Na Ji et al.   NATURE METHODS

Automated on-chip rapid microscopy, phenotyping and sorting of C. elegans

(2008) Kwanghun Chung et al.   NATURE METHODS

Dynamic Analyses of Drosophila Gastrulation Provide Insights into Collective Cell Migration

(2008) A. McMahon et al.   SCIENCE

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE