‘Next generation’ biogeography: towards understanding the drivers of species diversification and persistence

A generic classification of the Restioneae (Restionaceae), southern Africa

(2015) H. P. Linder et al.   BOTHALIA

Phylogeography of the Cape velvet worm (Onychophora: Peripatopsis capensis) reveals the impact of Pliocene/Pleistocene climatic oscillations on Afromontane forest in the Western Cape, South Africa

(2012) D. E. McDONALD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Outlier loci highlight the direction of introgression in oaks

(2012) E. Guichoux et al.   MOLECULAR ECOLOGY

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Whole genome sequencing (WGS) meets biogeography and shows that genomic selection in forest trees is feasible

(2012) Christian Lexer et al.   NEW PHYTOLOGIST

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

(2011) Angel Amores et al.   GENETICS

Phylogeography and genetic differentiation along the distributional range of the orchid Epidendrum fulgens: a Neotropical coastal species not restricted to glacial refugia

(2011) Fábio Pinheiro et al.   JOURNAL OF BIOGEOGRAPHY

Linking lineage diversification to climate and habitat heterogeneity: phylogeography of the southern African shrew Myosorex varius

(2011) Sandi Willows-Munro et al.   JOURNAL OF BIOGEOGRAPHY

Bridging the gap: western rock skinks (Trachylepis sulcata) have a short history in South Africa

(2011) DANIEL M. PORTIK et al.   MOLECULAR ECOLOGY

A framework for comparing processes of speciation in the presence of gene flow

(2011) CAROLE M. SMADJA et al.   MOLECULAR ECOLOGY

Sympatric bromeliad species (Pitcairnia spp.) facilitate tests of mechanisms involved in species cohesion and reproductive isolation in Neotropical inselbergs

(2011) C. PALMA-SILVA et al.   MOLECULAR ECOLOGY

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Cryptic diversity and morphological convergence in threatened species of fossorial skinks in the genus Scelotes (Squamata: Scincidae) from the Western Cape Coast of South Africa: Implications for species boundaries, digit reduction and conservation

(2011) Neil J.L. Heideman et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

Causes of Plant Diversification in the Cape Biodiversity Hotspot of South Africa

(2011) Jan Schnitzler et al.   SYSTEMATIC BIOLOGY

POSTFIRE RESPONSE AND GENETIC DIVERSITY IN ERICA COCCINEA: CONNECTING POPULATION DYNAMICS AND DIVERSIFICATION IN A BIODIVERSITY HOTSPOT

(2010) José Gabriel Segarra-Moragues et al.   EVOLUTION

Phylogeography of Schotia (Fabaceae): Recent Evolutionary Processes in an Ancient Thicket Biome Lineage

(2010) Syd Ramdhani et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Was it an explosion? Using population genetics to explore the dynamics of a recent radiation within Protea (Proteaceae L.)

(2010) RACHEL PRUNIER et al.   MOLECULAR ECOLOGY

Evidence of recent and continuous speciation in a biodiversity hotspot: a population genetic approach in southern African gladioli (Gladiolus; Iridaceae)

(2010) PAUL D. RYMER et al.   MOLECULAR ECOLOGY

Admixture facilitates adaptation from standing variation in the European aspen (Populus tremulaL.), a widespread forest tree

(2010) DULCINEIA DE CARVALHO et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing rapid evolution in a changing environment

(2010) Nicolas Salamin et al.   TRENDS IN ECOLOGY & EVOLUTION

Biotic diversity in the Southern African winter-rainfall region

(2010) H Peter Linder et al.   Current Opinion in Environmental Sustainability

Phylogeography of the Clicking Stream FrogStrongylopus grayii(Anura, Pyxicephalidae) reveals cryptic divergence across climatic zones in an abundant and widespread taxon

(2010) Krystal A. Tolley et al.   AFRICAN JOURNAL OF HERPETOLOGY

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Population Structure of Porthetes hispidus (Coleoptera: Curculionidae), a Pollinator of the African Cycad Encephalartos friderici-guilielmi

(2009) D. A. Downie et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

The merging of community ecology and phylogenetic biology

(2009) Jeannine Cavender-Bares et al.   ECOLOGY LETTERS

DIVERSIFICATION OF THE AFRICAN GENUSPROTEA(PROTEACEAE) IN THE CAPE BIODIVERSITY HOTSPOT AND BEYOND: EQUAL RATES IN DIFFERENT BIOMES

(2009) Luis M. Valente et al.   EVOLUTION

THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION

(2009) Jeffrey L. Feder et al.   EVOLUTION

Range-wide patterns of nuclear and chloroplast DNA diversity in Vriesea gigantea (Bromeliaceae), a neotropical forest species

(2009) C Palma-Silva et al.   HEREDITY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Tracing the impact of the Andean uplift on Neotropical plant evolution

(2009) A. Antonelli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

BIOTIC INTERACTIONS AND MACROEVOLUTION: EXTENSIONS AND MISMATCHES ACROSS SCALES AND LEVELS

(2008) David Jablonski   EVOLUTION

A Phylogeny for the African Restionaceae and New Perspectives on Morphology’s Role in Generating Complete Species Phylogenies for Large Clades

(2008) Christopher R. Hardy et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Climate change drives speciation in the southern rock agama (Agama atra) in the Cape Floristic Region, South Africa

(2008) Belinda L. Swart et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography: retrospect and prospect

(2008) John C. Avise   JOURNAL OF BIOGEOGRAPHY

Origin and diversification of the Greater Cape flora: Ancient species repository, hot-bed of recent radiation, or both?

(2008) G. Anthony Verboom et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Plant species radiations: where, when, why?

(2008) H. P. Linder   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION

Comparative phylogeography as an integrative approach to historical biogeography

(2003) Brian S. Arbogast et al.   JOURNAL OF BIOGEOGRAPHY