Novel and useful genic-SSR markers from de novo transcriptome sequencing of radish (Raphanus sativus L.)

Development and validation of microsatellite markers for Brachiaria ruziziensis obtained by partial genome assembly of Illumina single-end reads

(2013) Pedro IT Silva et al.   BMC GENOMICS

Development and validation of genic-SSR markers in sesame by RNA-seq

(2012) Haiyang Zhang et al.   BMC GENOMICS

De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)

(2012) Jianan Zhang et al.   BMC GENOMICS

Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

(2012) Jialei Duan et al.   BMC GENOMICS

Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers

(2012) Sukhjiwan Kaur et al.   BMC GENOMICS

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

(2012) Dejun Li et al.   BMC GENOMICS

Plant variety and cultivar identification: advances and prospects

(2012) Nicholas Kibet Korir et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

A novel strategy for identification of 47 pomegranate (Punica granatum) cultivars using RAPD markers

(2012) Y.P. Zhang et al.   GENETICS AND MOLECULAR RESEARCH

Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa)

(2012) Lu-jun Yu et al.   NEW PHYTOLOGIST

Development and cross-species/genera transferability of microsatellite markers discovered using 454 genome sequencing in chokecherry (Prunus virginiana L.)

(2012) Hongxia Wang et al.   PLANT CELL REPORTS

Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish

(2012) Shufen Wang et al.   PLANT CELL REPORTS

Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology

(2012) Yixing Wang et al.   PLoS One

An Improvement of Shotgun Proteomics Analysis by Adding Next-Generation Sequencing Transcriptome Data in Orange

(2012) Jiaping Song et al.   PLoS One

Development and characterization of cDNA library based novel EST-SSR marker in radish (Raphanus sativus L.)

(2012) Lina Jiang et al.   SCIENTIA HORTICULTURAE

Development of EST-SSR markers and investigation of genetic relatedness in tung tree

(2012) Wei Xu et al.   Tree Genetics & Genomes

Transcript profiling during salt stress of young cotton (Gossypium hirsutum) seedlings via Solexa sequencing

(2011) Gang Wang et al.   ACTA PHYSIOLOGIAE PLANTARUM

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

(2011) Massimo Iorizzo et al.   BMC GENOMICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

(2011) Sutapa Dutta et al.   BMC PLANT BIOLOGY

An EST-SSR Linkage Map of Raphanus sativus and Comparative Genomics of the Brassicaceae

(2011) K. Shirasawa et al.   DNA RESEARCH

Transcriptome Sequencing of Hevea brasiliensis for Development of Microsatellite Markers and Construction of a Genetic Linkage Map

(2011) K. Triwitayakorn et al.   DNA RESEARCH

Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus

(2011) Manosh Kumar Biswas et al.   MOLECULAR BIOLOGY REPORTS

Development of genomic simple sequence repeat markers for linseed using next-generation sequencing technology

(2011) Sandip M. Kale et al.   MOLECULAR BREEDING

Development of new microsatellite markers (SSRs) for Humulus lupulus

(2011) Jared Koelling et al.   MOLECULAR BREEDING

OrchidBase: A Collection of Sequences of the Transcriptome Derived from Orchids

(2011) C.-H. Fu et al.   PLANT AND CELL PHYSIOLOGY

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Analysis of genetic relationships and identification of flowering-mei cultivars using EST-SSR markers developed from apricot and fruiting-mei

(2011) Yu-Juan Wang et al.   SCIENTIA HORTICULTURAE

Development and characterization of genomic and expressed SSRs for levant cotton (Gossypium herbaceum L.)

(2011) Satya Narayan Jena et al.   THEORETICAL AND APPLIED GENETICS

SSR and EST-SSR-based genetic linkage map of cassava (Manihot esculenta Crantz)

(2011) Supajit Sraphet et al.   THEORETICAL AND APPLIED GENETICS

In silico mining for simple sequence repeat loci in a pineapple expressed sequence tag database and cross-species amplification of EST-SSR markers across Bromeliaceae

(2011) Tina Wöhrmann et al.   THEORETICAL AND APPLIED GENETICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim

(2010) Shaohua Zeng et al.   BMC GENOMICS

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Developing new SSR markers from ESTs of pea (Pisum sativum L.)

(2010) Ya-ming Gong et al.   Journal of Zhejiang University-SCIENCE B

Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping

(2010) Hong Huang et al.   MOLECULAR BREEDING

Genetic diversity analysis of Monascus strains using SRAP and ISSR markers

(2010) Yanchun Shao et al.   MYCOSCIENCE

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

Genetic Diversity of Radish (Raphanus sativus L.) Germplasm Resources Revealed by AFLP and RAPD Markers

(2010) Qiusheng Kong et al.   PLANT MOLECULAR BIOLOGY REPORTER

EST-derived SSR markers in Jatropha curcas L.: development, characterization, polymorphism, and transferability across the species/genera

(2010) Hemant Kumar Yadav et al.   Tree Genetics & Genomes

Ontology and diversity of transcript-associated microsatellites mined from a globe artichoke EST database

(2009) Davide Scaglione et al.   BMC GENOMICS

Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species

(2009) Xuanqiang Liang et al.   BMC PLANT BIOLOGY

Polymorphic Microsatellite Markers Transferable Across Capsicum Species

(2009) Ayse Gul Ince et al.   PLANT MOLECULAR BIOLOGY REPORTER

Development, characterization and cross-species/genera transferability of EST-SSR markers for rubber tree (Hevea brasiliensis)

(2008) S. P. Feng et al.   MOLECULAR BREEDING

Characteristics and transferability of new apple EST-derived SSRs to other Rosaceae species

(2008) Ksenija Gasic et al.   MOLECULAR BREEDING

DNA fingerprinting and genetic diversity analysis of late-bolting radish cultivars with RAPD, ISSR and SRAP markers

(2008) Li-Wang Liu et al.   SCIENTIA HORTICULTURAE