De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

(2011) Eshchar Mizrachi et al.   BMC GENOMICS

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

(2011) Frank M You et al.   BMC GENOMICS

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

(2011) Maria D Logacheva et al.   BMC GENOMICS

Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology

(2011) Rebekah E Oliver et al.   BMC GENOMICS

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

(2011) Sutapa Dutta et al.   BMC PLANT BIOLOGY

OrchidBase: A Collection of Sequences of the Transcriptome Derived from Orchids

(2011) C.-H. Fu et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development

(2010) Xiao-Wei Wang et al.   BMC GENOMICS

Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim

(2010) Shaohua Zeng et al.   BMC GENOMICS

High-throughput SNP discovery and assay development in common bean

(2010) David L Hyten et al.   BMC GENOMICS

RoBuST: an integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae

(2010) Ashwini Bhasi et al.   BMC PLANT BIOLOGY

De novo assembly of short sequence reads

(2010) K. Paszkiewicz et al.   BRIEFINGS IN BIOINFORMATICS

Carrots of Many Colors Provide Basic Nutrition and Bioavailable Phytochemicals Acting as a Functional Food

(2010) Sara A. Arscott et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

EST and EST-SSR marker resources for Iris

(2009) Shunxue Tang et al.   BMC PLANT BIOLOGY

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Diversity of DcMaster-like elements of the PIF/Harbinger superfamily in the carrot genome

(2008) Dariusz Grzebelus et al.   GENETICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Development of a set of SNP markers present in expressed genes of the apple

(2008) David Chagné et al.   GENOMICS

Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences

(2008) Pablo F. Cavagnaro et al.   MOLECULAR GENETICS AND GENOMICS

Analysis of proanthocyanidins

(2008) Wolfgang Hümmer et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Whole-genome sequencing and variant discovery in C. elegans

(2008) LaDeana W Hillier et al.   NATURE METHODS