Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa)

RiceABCG43Is Cd Inducible and Confers Cd Tolerance on Yeast

(2011) Koshiro ODA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

(2011) Håvard Aanes et al.   GENOME RESEARCH

Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)

(2011) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

The OsNRAMP1 iron transporter is involved in Cd accumulation in rice

(2011) Ryuichi Takahashi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comprehensive Sequence and Whole-Life-Cycle Expression Profile Analysis of the Phosphate Transporter Gene Family in Rice

(2011) Fang Liu et al.   Molecular Plant

Overexpression of Arabidopsis ACBP3 Enhances NPR1-Dependent Plant Resistance to Pseudomonas syringe pv tomato DC3000

(2011) S. Xiao et al.   PLANT PHYSIOLOGY

Arsenic as a Food Chain Contaminant: Mechanisms of Plant Uptake and Metabolism and Mitigation Strategies

(2010) Fang-Jie Zhao et al.   Annual Review of Plant Biology

Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

(2010) Sonali Dubey et al.   BMC GENOMICS

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Genome-wide analysis of plant metal transporters, with an emphasis on poplar

(2010) Aude Migeon et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Arsenic tolerances in rice (Oryza sativa) have a predominant role in transcriptional regulation of a set of genes including sulphur assimilation pathway and antioxidant system

(2010) Arti Rai et al.   CHEMOSPHERE

Profiling of cold-stress-responsive miRNAs in rice by microarrays

(2010) De-Kang Lv et al.   GENE

Recent advances in arsenic accumulation and metabolism in rice

(2010) Rakesh Tuli et al.   MOLECULAR BREEDING

Spatial distribution of arsenic and temporal variation of its concentration in rice

(2010) Mao-Zhong Zheng et al.   NEW PHYTOLOGIST

DSAP: deep-sequencing small RNA analysis pipeline

(2010) Po-Jung Huang et al.   NUCLEIC ACIDS RESEARCH

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

(2010) Jian-Hua Yang et al.   NUCLEIC ACIDS RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters

(2010) W.-Y. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New roles for acyl-CoA-binding proteins (ACBPs) in plant development, stress responses and lipid metabolism

(2010) Shi Xiao et al.   PROGRESS IN LIPID RESEARCH

Spatial and Temporal Variations of Groundwater Arsenic in South and Southeast Asia

(2010) S. Fendorf et al.   SCIENCE

Jasmonate Biochemical Pathway

(2010) A. Gfeller et al.   Science Signaling

The role of microRNAs in copper and cadmium homeostasis

(2009) Yan-Fei Ding et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data

(2009) Yu-Ping Wang et al.   BMC GENOMICS

Mechanisms to cope with arsenic or cadmium excess in plants

(2009) Nathalie Verbruggen et al.   CURRENT OPINION IN PLANT BIOLOGY

Mitigation of Arsenic Accumulation in Rice with Water Management and Silicon Fertilization

(2009) R. Y. Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis

(2009) Dov Moldovan et al.   JOURNAL OF EXPERIMENTAL BOTANY

PMRD: plant microRNA database

(2009) Zhenhai Zhang et al.   NUCLEIC ACIDS RESEARCH

Time course analysis of gene regulation under cadmium stress in rice

(2009) Ippei Ogawa et al.   PLANT AND SOIL

Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize

(2009) X. Wang et al.   PLANT CELL

The Rice Aquaporin Lsi1 Mediates Uptake of Methylated Arsenic Species

(2009) R.-Y. Li et al.   PLANT PHYSIOLOGY

Jasmonate Passes Muster: A Receptor and Targets for the Defense Hormone

(2008) John Browse   Annual Review of Plant Biology

A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes

(2008) Gerd P Bienert et al.   BMC BIOLOGY

Transcriptional responses of Arabidopsis thaliana plants to As (V) stress

(2008) Jason M Abercrombie et al.   BMC PLANT BIOLOGY

Comparative transcriptome analysis of arsenate and arsenite stresses in rice seedlings

(2008) Debasis Chakrabarty et al.   CHEMOSPHERE

Exposure to inorganic arsenic from rice: A global health issue?

(2008) Yong-Guan Zhu et al.   ENVIRONMENTAL POLLUTION

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

NIP1;1, an Aquaporin Homolog, Determines the Arsenite Sensitivity ofArabidopsis thaliana

(2008) Takehiro Kamiya et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rice–arsenate interactions in hydroponics: whole genome transcriptional analysis

(2008) Gareth J. Norton et al.   JOURNAL OF EXPERIMENTAL BOTANY

Heavy metal-regulated new microRNAs from rice

(2008) Si Qi Huang et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Arsenic uptake and metabolism in plants

(2008) F. J. Zhao et al.   NEW PHYTOLOGIST

A Transporter Regulating Silicon Distribution in Rice Shoots

(2008) N. Yamaji et al.   PLANT CELL

Transporters of arsenite in rice and their role in arsenic accumulation in rice grain

(2008) J. F. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA

Plant ABC proteins – a unified nomenclature and updated inventory

(2008) Paul J. Verrier et al.   TRENDS IN PLANT SCIENCE