An Improvement of Shotgun Proteomics Analysis by Adding Next-Generation Sequencing Transcriptome Data in Orange

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

A label-free differential quantitative mass spectrometry method for the characterization and identification of protein changes during citrus fruit development

(2011) Ehud Katz et al.   Proteome Science

The Mucilage Proteome of Maize (Zea maysL.) Primary Roots

(2010) Wei Ma et al.   JOURNAL OF PROTEOME RESEARCH

Shotgun proteomics identifies proteins specific for acute renal transplant rejection

(2010) Tara K. Sigdel et al.   Proteomics Clinical Applications

Generation of a predicted protein database from EST data and application to iTRAQ analyses in grape (Vitis vinifera cv. Cabernet Sauvignon) berries at ripening initiation

(2009) Joost Lucker et al.   BMC GENOMICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Label-free Quantitative Proteomics Analysis of Etiolated Maize Seedling Leaves during Greening

(2009) Zhuo Shen et al.   MOLECULAR & CELLULAR PROTEOMICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Establishment of a Protein Reference Map for Soybean Root Hair Cells

(2008) L. Brechenmacher et al.   PLANT PHYSIOLOGY