The jmzQuantML programming interface and validator for the mzQuantML data standard

A tutorial for software development in quantitative proteomics using PSI standard formats

(2013) Faviel F. Gonzalez-Galarza et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics

(2013) Mathias Walzer et al.   MOLECULAR & CELLULAR PROTEOMICS

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

(2013) G. Mayer et al.   Database-The Journal of Biological Databases and Curation

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

(2012) Andrew R. Jones et al.   MOLECULAR & CELLULAR PROTEOMICS

A Critical Appraisal of Techniques, Software Packages, and Standards for Quantitative Proteomic Analysis

(2012) Faviel F. Gonzalez-Galarza et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

A Software Toolkit and Interface for Performing Stable Isotope Labeling and Top3 Quantification Using Progenesis LC-MS

(2012) Da Qi et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data

(2012) Florian Reisinger et al.   PROTEOMICS

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists

(2011) Eric W. Deutsch et al.   MOLECULAR & CELLULAR PROTEOMICS

mzML—a Community Standard for Mass Spectrometry Data

(2010) Lennart Martens et al.   MOLECULAR & CELLULAR PROTEOMICS

jmzML, an open-source Java API for mzML, the PSI standard for MS data

(2010) Richard G. Côté et al.   PROTEOMICS

The PSI semantic validator: A framework to check MIAPE compliance of proteomics data

(2009) Luisa Montecchi-Palazzi et al.   PROTEOMICS