Functional Marker Detection and Analysis on a Comprehensive Transcriptome of Large Yellow Croaker by Next Generation Sequencing

Genome-wide discovery and in silico mapping of gene-associated SNPs in Nile tilapia

(2014) Jun Hong Xia et al.   AQUACULTURE

Dietary chromium polynicotinate enhanced growth performance, feed utilization, and resistance to Cryptocaryon irritans in juvenile large yellow croaker (Larmichthys crocea)

(2014) Jun Wang et al.   AQUACULTURE

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

(2014) Ross D Houston et al.   BMC GENOMICS

De Novo Transcriptome Sequencing of the Snail Echinolittorina malaccana: Identification of Genes Responsive to Thermal Stress and Development of Genetic Markers for Population Studies

(2014) Wei Wang et al.   MARINE BIOTECHNOLOGY

The telomerase inhibitor Gno1p/PINX1 activates the helicase Prp43p during ribosome biogenesis

(2014) Y.-L. Chen et al.   NUCLEIC ACIDS RESEARCH

SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing

(2014) Yang Yu et al.   PLoS One

SNP Discovery from Transcriptome of the Swimbladder of Takifugu rubripes

(2014) Jun Cui et al.   PLoS One

De Novo Characterization of the Spleen Transcriptome of the Large Yellow Croaker (Pseudosciaena crocea) and Analysis of the Immune Relevant Genes and Pathways Involved in the Antiviral Response

(2014) Yinnan Mu et al.   PLoS One

Identification and Analysis of Genome-Wide SNPs Provide Insight into Signatures of Selection and Domestication in Channel Catfish (Ictalurus punctatus)

(2014) Luyang Sun et al.   PLoS One

A genome scan revealed significant associations of growth traits with a major QTL and GHR2 in tilapia

(2014) Feng Liu et al.   Scientific Reports

Physiological and molecular changes in large yellow croaker (Pseudosciaena croceaR.) with high-fat diet-induced fatty liver disease

(2013) Xinxia Wang et al.   AQUACULTURE RESEARCH

Rapid development of microsatellite markers from the large yellow croaker (Pseudosciaena crocea) using next generation DNA sequencing technology

(2013) Zhenming Lü et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)

(2013) Linlin Zhang et al.   MARINE BIOTECHNOLOGY

Predicting polymorphic EST-SSRsin silico

(2013) Chris Duran et al.   Molecular Ecology Resources

Transcriptome sequencing of sea cucumber (Apostichopus japonicus) and the identification of gene-associated markers

(2013) Z. C. Zhou et al.   Molecular Ecology Resources

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Oyster Shell Proteins Originate from Multiple Organs and Their Probable Transport Pathway to the Shell Formation Front

(2013) Xiaotong Wang et al.   PLoS One

lobSTR: A short tandem repeat profiler for personal genomes

(2012) Melissa Gymrek et al.   GENOME RESEARCH

Estimated genetic parameters for growth-related traits in large yellow croakerLarimichthys croceausing microsatellites to assign parentage

(2012) X. D. Liu et al.   JOURNAL OF FISH BIOLOGY

Genome-Wide SNP Discovery from Transcriptome of Four Common Carp Strains

(2012) Jian Xu et al.   PLoS One

Construction of a High-Density Microsatellite Genetic Linkage Map and Mapping of Sexual and Growth-Related Traits in Half-Smooth Tongue Sole (Cynoglossus semilaevis)

(2012) Wentao Song et al.   PLoS One

EST-derived microsatellites in Pseudosciaena crocea and their applicability to related species

(2011) Hua Ye et al.   ACTA OCEANOLOGICA SINICA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

(2011) Shikai Liu et al.   BMC GENOMICS

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Understanding the contribution of synonymous mutations to human disease

(2011) Zuben E. Sauna et al.   NATURE REVIEWS GENETICS

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection

(2010) Yinnan Mu et al.   BMC GENOMICS

EST analysis and identification of gonad-related genes from the normalized cDNA library of large yellow croaker, Larimichthys crocea

(2010) Peng Zhou et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Construction of Genetic Linkage Maps and Comparative Genome Analysis of Catfish Using Gene-Associated Markers

(2009) H. Kucuktas et al.   GENETICS

Studying Patterns of Recent Evolution at Synonymous Sites and Intronic Sites in Drosophila melanogaster

(2009) Kai Zeng et al.   JOURNAL OF MOLECULAR EVOLUTION

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Quality assessment parameters for EST-derived SNPs from catfish

(2008) Shaolin Wang et al.   BMC GENOMICS