SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing

Development and Validation of Single Nucleotide Polymorphisms (SNPs) Markers from Two Transcriptome 454-Runs of Turbot (Scophthalmus maximus) Using High-Throughput Genotyping

(2013) Manuel Vera et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data

(2013) Emma M. Quinn et al.   PLoS One

EST-derived SNP discovery and selective pressure analysis in Pacific white shrimp (Litopenaeus vannamei)

(2012) Chengzhang Liu et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Transcriptome Analysis of Silver Carp (Hypophthalmichthys molitrix) by Paired-End RNA Sequencing

(2012) B. Fu et al.   DNA RESEARCH

High-Throughput Transcriptome Sequencing for Snp and Gene Discovery in a Moth

(2012) Nicholas J. Miller et al.   ENVIRONMENTAL ENTOMOLOGY

Evolution of Microsatellite Loci of Tropical and Temperate Anguilla Eels

(2012) Mei-Chen Tseng   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome Analysis and SNP Development Can Resolve Population Differentiation of Streblospio benedicti, a Developmentally Dimorphic Marine Annelid

(2012) Christina Zakas et al.   PLoS One

SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)

(2012) Sarah J. Helyar et al.   PLoS One

Genome-Wide SNP Discovery from Transcriptome of Four Common Carp Strains

(2012) Jian Xu et al.   PLoS One

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

(2011) Shikai Liu et al.   BMC GENOMICS

Wild and Hatchery Populations of Korean Starry Flounder (Platichthys stellatus) Compared Using Microsatellite DNA Markers

(2011) Hye Suck An et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Gains in QTL Detection Using an Ultra-High Density SNP Map Based on Population Sequencing Relative to Traditional RFLP/SSR Markers

(2011) Huihui Yu et al.   PLoS One

Single nucleotide polymorphisms in the actin and crustacean hyperglycemic hormone genes and their correlation with individual growth performance in giant freshwater prawn Macrobrachium rosenbergii

(2010) Nguyen Minh Thanh et al.   AQUACULTURE

Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing

(2010) Liusuo Zhang et al.   AQUACULTURE

Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)

(2010) Sophie Hubert et al.   BMC GENOMICS

Generation and analysis of 10 000 ESTs from the half-smooth tongue soleCynoglossus semilaevisand identification of microsatellite and SNP markers

(2010) Z. Sha et al.   JOURNAL OF FISH BIOLOGY

A Review of the Major Penaeid Shrimp EST Studies and the Construction of a Shrimp Transcriptome Database Based on the ESTs from Four Penaeid Shrimp

(2010) Jiann-Horng Leu et al.   MARINE BIOTECHNOLOGY

Application of single nucleotide polymorphisms to non-model species: a technical review

(2010) M. R. GARVIN et al.   Molecular Ecology Resources

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Non-Synonymous and Synonymous Coding SNPs Show Similar Likelihood and Effect Size of Human Disease Association

(2010) Rong Chen et al.   PLoS One

A major SNP resource for dissection of phenotypic and genetic variation in Pacific white shrimp (Litopenaeus vannamei)

(2009) D. C. Ciobanu et al.   ANIMAL GENETICS

A gene-based SNP linkage map for pacific white shrimp, Litopenaeus vannamei

(2009) Z.-Q. Du et al.   ANIMAL GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

SNP discovery inLitopenaeus vannameiwith a new computational pipeline

(2008) D. M. Gorbach et al.   ANIMAL GENETICS

Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

(2008) Thomas Moen et al.   BMC GENETICS

A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers

(2008) Thomas Moen et al.   BMC GENOMICS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH