De Novo Transcriptome Sequencing of the Snail Echinolittorina malaccana: Identification of Genes Responsive to Thermal Stress and Development of Genetic Markers for Population Studies

RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

(2013) Steve Smith et al.   BMC GENOMICS

Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective

(2013) P. P. Amaral et al.   Briefings in Functional Genomics

Transcriptome Profiling of Gill Tissue in Regionally Bred and Globally Farmed Rainbow Trout Strains Reveals Different Strategies for Coping with Thermal Stress

(2013) Alexander Rebl et al.   MARINE BIOTECHNOLOGY

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish

(2013) Shikai Liu et al.   PHYSIOLOGICAL GENOMICS

De Novo Assembly, Gene Annotation and Marker Development Using Illumina Paired-End Transcriptome Sequences in Celery (Apium graveolens L.)

(2013) Nan Fu et al.   PLoS One

Transcriptional Response of the Mussel Mytilus galloprovincialis (Lam.) following Exposure to Heat Stress and Copper

(2013) Alessandro Negri et al.   PLoS One

Genetics of Climate Change Adaptation

(2012) Steven J. Franks et al.   Annual Review of Genetics

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

(2012) Sean D Schoville et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptome analysis using next-generation sequencing

(2012) Kai-Oliver Mutz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Forecasting extinction risk of ectotherms under climate warming: an evolutionary perspective

(2012) Richard J. Walters et al.   FUNCTIONAL ECOLOGY

Changes in extreme cold tolerance, membrane composition and cardiac transcriptome during the first day of thermal acclimation in the porcelain crab Petrolisthes cinctipes

(2012) D. Ronges et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Latitudinal comparison of thermotolerance and HSP70 production in F2 larvae of the greenshell mussel (Perna canaliculus)

(2012) B. J. Dunphy et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

Use of Comparative Genomics to Develop EST-SSRs for Red Drum (Sciaenops ocellatus)

(2012) Christopher M. Hollenbeck et al.   MARINE BIOTECHNOLOGY

Analysis of a deep transcriptome from the mantle tissue of Patella vulgata Linnaeus (Mollusca: Gastropoda: Patellidae) reveals candidate biomineralising genes

(2012) Gijsbert D. A. Werner et al.   MARINE BIOTECHNOLOGY

Expressed Sequences and Polymorphisms in Rohu Carp (Labeo rohita, Hamilton) Revealed by mRNA-seq

(2012) Nicholas Robinson et al.   MARINE BIOTECHNOLOGY

Exploring the Transcriptome of Atlantic Salmon (Salmo salar) Skin, a Major Defense Organ

(2012) Giulia Micallef et al.   MARINE BIOTECHNOLOGY

Biology of the Heat Shock Response and Protein Chaperones: Budding Yeast (Saccharomyces cerevisiae) as a Model System

(2012) J. Verghese et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Functional Determinants of Temperature Adaptation in Enzymes of Cold- versus Warm-Adapted Mussels (Genus Mytilus)

(2012) B. L. Lockwood et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Defining the limits of physiological plasticity: how gene expression can assess and predict the consequences of ocean change

(2012) T. G. Evans et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Seawater Acidification and Elevated Temperature Affect Gene Expression Patterns of the Pearl Oyster Pinctada fucata

(2012) Wenguang Liu et al.   PLoS One

Functional Validation of Hydrophobic Adaptation to Physiological Temperature in the Small Heat Shock Protein αA-crystallin

(2012) Mason Posner et al.   PLoS One

Cellular thermotolerance is associated with heat shock protein 70.1 genetic polymorphisms in Holstein lactating cows

(2011) Loredana Basiricò et al.   CELL STRESS & CHAPERONES

Thermal adaptation in the intertidal snail Echinolittorina malaccana contradicts current theory by revealing the crucial roles of resting metabolism

(2011) D. J. Marshall et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

(2011) Zhi Wei et al.   NUCLEIC ACIDS RESEARCH

A general model for effects of temperature on ectotherm ontogenetic growth and development

(2011) W. Zuo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Local Adaptation in Marine Invertebrates

(2010) Eric Sanford et al.   Annual Review of Marine Science

Living in the Now: Physiological Mechanisms to Tolerate a Rapidly Changing Environment

(2010) Gretchen E. Hofmann et al.   Annual Review of Physiology

Insights into the role of differential gene expression on the ecological adaptation of the snail Littorina saxatilis

(2010) Mónica Martínez-Fernández et al.   BMC EVOLUTIONARY BIOLOGY

Integration of molecular functions at the ecosystemic level: breakthroughs and future goals of environmental genomics and post-genomics

(2010) Philippe Vandenkoornhuyse et al.   ECOLOGY LETTERS

Variation in the heat shock response and its implication for predicting the effect of global climate change on species' biogeographical distribution ranges and metabolic costs

(2010) L. Tomanek   JOURNAL OF EXPERIMENTAL BIOLOGY

Oxygen- and capacity-limitation of thermal tolerance: a matrix for integrating climate-related stressor effects in marine ecosystems

(2010) H.-O. Portner   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success

(2010) B. L. Lockwood et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptional response to heat stress in the Antarctic bivalve Laternula elliptica

(2010) Manuela Truebano et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Thermal tolerance of Strongylocentrotus purpuratus early life history stages: mortality, stress-induced gene expression and biogeographic patterns

(2010) LaTisha M. Hammond et al.   MARINE BIOLOGY

MicroRNA Functions in Stress Responses

(2010) Anthony K.L. Leung et al.   MOLECULAR CELL

The Heat Shock Response: Life on the Verge of Death

(2010) Klaus Richter et al.   MOLECULAR CELL

Warming reduces metabolic rate in marine snails: adaptation to fluctuating high temperatures challenges the metabolic theory of ecology

(2010) D. J. Marshall et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Integrating the cell stress response: a new view of molecular chaperones as immunological and physiological homeostatic regulators

(2009) Brian Henderson   CELL BIOCHEMISTRY AND FUNCTION

Comparing geographical genetic differentiation between candidate and noncandidate loci for adaptation strengthens support for parallel ecological divergence in the marine snailLittorina saxatilis

(2009) J. GALINDO et al.   MOLECULAR ECOLOGY

Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes

(2009) JONATHON H. STILLMAN et al.   MOLECULAR ECOLOGY

Global depression in gene expression as a response to rapid thermal changes in vent mussels

(2009) I. Boutet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of elevated temperature and cadmium exposure on stress protein response in eastern oysters Crassostrea virginica (Gmelin)

(2008) A.V. Ivanina et al.   AQUATIC TOXICOLOGY

Rhythms of Gene Expression in a Fluctuating Intertidal Environment

(2008) Andrew Y. Gracey et al.   CURRENT BIOLOGY

Ref(2)P, theDrosophila melanogasterhomologue of mammalian p62, is required for the formation of protein aggregates in adult brain

(2008) Ioannis P. Nezis et al.   JOURNAL OF CELL BIOLOGY