Transcriptional coordination of physiological responses inNannochloropsis oceanicaCCMP1779 under light/dark cycles

Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage

(2015) Ansgar Gruber et al.   PLANT JOURNAL

Molecular mechanisms for photosynthetic carbon partitioning into storage neutral lipids in Nannochloropsis oceanica under nitrogen-depletion conditions

(2015) Jing Jia et al.   Algal Research-Biomass Biofuels and Bioproducts

The role of malic enzyme as the provider of NADPH in oleaginous microorganisms: a reappraisal and unsolved problems

(2014) Colin Ratledge   BIOTECHNOLOGY LETTERS

Ultrastructure and Composition of the Nannochloropsis gaditana Cell Wall

(2014) Matthew J. Scholz et al.   EUKARYOTIC CELL

Localization of enzymes relating to C4 organic acid metabolisms in the marine diatom, Thalassiosira pseudonana

(2014) Rie Tanaka et al.   PHOTOSYNTHESIS RESEARCH

Choreography of Transcriptomes and Lipidomes of Nannochloropsis Reveals the Mechanisms of Oil Synthesis in Microalgae

(2014) J. Li et al.   PLANT CELL

Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages

(2014) E. A. Ottesen et al.   SCIENCE

Prevalence, Evolution, and cis -Regulation of Diel Transcription in Chlamydomonas reinhardtii

(2014) Nicholas Panchy et al.   G3-Genes Genomes Genetics

Nannochloropsis Genomes Reveal Evolution of Microalgal Oleaginous Traits

(2014) Dongmei Wang et al.   PLoS Genetics

Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae

(2013) Li Wei et al.   BMC GENOMICS

Central Carbon Metabolism and Electron Transport in Chlamydomonas reinhardtii: Metabolic Constraints for Carbon Partitioning between Oil and Starch

(2013) Xenie Johnson et al.   EUKARYOTIC CELL

Transcriptome sequencing, annotation and expression analysis of Nannochloropsis sp. at different growth phases

(2013) Minggang Zheng et al.   GENE

Mannitol metabolism in brown algae involves a new phosphatase family

(2013) Agnès Groisillier et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chromosome Scale Genome Assembly and Transcriptome Profiling of Nannochloropsis gaditana in Nitrogen Depletion

(2013) Elisa Corteggiani Carpinelli et al.   Molecular Plant

Regulation of nucleosome dynamics by histone modifications

(2013) Gabriel E Zentner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

AUREOCHROME1a-Mediated Induction of the Diatom-Specific CyclindsCYC2Controls the Onset of Cell Division in Diatoms (Phaeodactylum tricornutum)

(2013) Marie J.J. Huysman et al.   PLANT CELL

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

(2013) J. Ashworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SLC4 family transporters in a marine diatom directly pump bicarbonate from seawater

(2013) K. Nakajima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian Control of Chloroplast Transcription by a Nuclear-Encoded Timing Signal

(2013) Z. B. Noordally et al.   SCIENCE

Evaluation of putative internal reference genes for gene expression normalization in Nannochloropsis sp. by quantitative real-time RT-PCR

(2012) Shaona Cao et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Investigation of fatty acids accumulation in Nannochloropsis oculata for biodiesel application

(2012) G. Van Vooren et al.   BIORESOURCE TECHNOLOGY

Microalgal biofactories: a promising approach towards sustainable omega-3 fatty acid production

(2012) T Adarme-Vega et al.   Microbial Cell Factories

The role of C4metabolism in the marine diatomPhaeodactylum tricornutum

(2012) Maya Haimovich-Dayan et al.   NEW PHYTOLOGIST

The regulation of plant growth by the circadian clock

(2012) E. M. Farré   PLANT BIOLOGY

A Galactoglycerolipid Lipase Is Required for Triacylglycerol Accumulation and Survival Following Nitrogen Deprivation in Chlamydomonas reinhardtii

(2012) X. Li et al.   PLANT CELL

Gene Regulation of Carbon Fixation, Storage, and Utilization in the Diatom Phaeodactylum tricornutum Acclimated to Light/Dark Cycles

(2012) M. S. Chauton et al.   PLANT PHYSIOLOGY

A Lipid Droplet Protein of Nannochloropsis with Functions Partially Analogous to Plant Oleosins

(2012) A. Vieler et al.   PLANT PHYSIOLOGY

Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle

(2012) Jacob R. Waldbauer et al.   PLoS One

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropsis gaditana

(2012) Randor Radakovits et al.   Nature Communications

Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779

(2012) Astrid Vieler et al.   PLoS Genetics

Comparative analysis of diatom genomes reveals substantial differences in the organization of carbon partitioning pathways

(2012) Sarah R. Smith et al.   Algal Research-Biomass Biofuels and Bioproducts

PredPlantPTS1: A Web Server for the Prediction of Plant Peroxisomal Proteins

(2012) Sigrun Reumann et al.   Frontiers in Plant Science

Chlamydomonas reinhardtii as a new model system for studying the molecular basis of the circadian clock

(2011) Takuya Matsuo et al.   FEBS LETTERS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Os-GIGANTEAConfers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field

(2011) Takeshi Izawa et al.   PLANT CELL

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

(2011) Sergei A. Filichkin et al.   PLoS One

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles

(2010) Annabelle Monnier et al.   BMC GENOMICS

Genome-wide analysis of diel gene expression in the unicellular N2-fixing cyanobacterium Crocosphaera watsonii WH 8501

(2010) Tuo Shi et al.   ISME Journal

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

(2010) J. Mark Cock et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus

(2010) Antoine Gravot et al.   NEW PHYTOLOGIST

Mannitol-1-phosphate dehydrogenase activity in Ectocarpus siliculosus, a key role for mannitol synthesis in brown algae

(2010) Sylvie Rousvoal et al.   PLANTA

Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling

(2010) Marie JJ Huysman et al.   GENOME BIOLOGY

The MTERF family proteins: Mitochondrial transcription regulators and beyond

(2009) Marina Roberti et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity

(2009) Sacha Coesel et al.   EMBO REPORTS

RNA Interference Silencing of a Major Lipid Droplet Protein Affects Lipid Droplet Size inChlamydomonas reinhardtii

(2009) Eric R. Moellering et al.   EUKARYOTIC CELL

Choreography of the Transcriptome, Photophysiology, and Cell Cycle of a Minimal Photoautotroph, Prochlorococcus

(2009) Erik R. Zinser et al.   PLoS One

Microalgae for oil: Strain selection, induction of lipid synthesis and outdoor mass cultivation in a low-cost photobioreactor

(2008) Liliana Rodolfi et al.   BIOTECHNOLOGY AND BIOENGINEERING

HECTAR: A method to predict subcellular targeting in heterokonts

(2008) Bernhard Gschloessl et al.   BMC BIOINFORMATICS

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

Disrupting Two Arabidopsis thaliana Xylosyltransferase Genes Results in Plants Deficient in Xyloglucan, a Major Primary Cell Wall Component

(2008) D. M. Cavalier et al.   PLANT CELL

Physiological and Transcriptomic Evidence for a Close Coupling between Chloroplast Ontogeny and Cell Cycle Progression in the Pennate Diatom Seminavis robusta

(2008) J. Gillard et al.   PLANT PHYSIOLOGY

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics

Unusual Nuclear Division in Nannochloropsis oculata (Eustigmatophyceae, Heterokonta) which May Ensure Faithful Transmission of Secondary Plastids

(2008) Ryohei Murakami et al.   PROTIST