Enhancing onion breeding using molecular tools

Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.)

(2015) Rina Kamenetsky et al.   BMC GENOMICS

Breeding-assisted genomics

(2015) Jesse Poland   CURRENT OPINION IN PLANT BIOLOGY

AcSKP1, a multiplex PCR-based co-dominant marker in complete linkage disequilibrium with the male-fertility restoration (Ms) locus, and its application in open-pollinated populations of onion

(2015) Yu Meng Huo et al.   EUPHYTICA

Identification of candidate genes associated with fertility restoration of cytoplasmic male-sterility in onion (Allium cepa L.) using a combination of bulked segregant analysis and RNA-seq

(2015) Sunggil Kim et al.   THEORETICAL AND APPLIED GENETICS

Integrative structural annotation of de novo RNA-Seq provides an accurate reference gene set of the enormous genome of the onion (Allium cepa L.)

(2014) S. Kim et al.   DNA RESEARCH

Progress in TILLING as a tool for functional genomics and improvement of crops

(2014) Liang Chen et al.   Journal of Integrative Plant Biology

Genetic analyses of anthocyanin concentrations and intensity of red bulb color among segregating haploid progenies of onion

(2014) Janejira Duangjit et al.   MOLECULAR BREEDING

Iris yellow spot virus(Tospovirus:Bunyaviridae): from obscurity to research priority

(2014) Sudeep Bag et al.   MOLECULAR PLANT PATHOLOGY

RNA interference: concept to reality in crop improvement

(2014) Satyajit Saurabh et al.   PLANTA

Assessing the genetic diversity of Spanish Allium cepa landraces for onion breeding using microsatellite markers

(2014) C. Mallor et al.   SCIENTIA HORTICULTURAE

Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding

(2014) Rajeev K. Varshney et al.   PLOS BIOLOGY

Future Scenarios for Plant Phenotyping

(2013) Fabio Fiorani et al.   Annual Review of Plant Biology

Sequencing and annotation of the chloroplast DNAs and identification of polymorphisms distinguishing normal male-fertile and male-sterile cytoplasms of onion

(2013) Christopher von Kohn et al.   GENOME

Nectar and Flower Traits of Different Onion Male Sterile Lines Related to Pollination Efficiency and Seed Yield of F1 Hybrids

(2013) Verónica C. Soto et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Measurement of the distribution of non-structural carbohydrate composition in onion populations by a high-throughput microplate enzymatic assay

(2013) Roopashree Revanna et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Development of Functional Markers for Detection of Inactive DFR-A Alleles Responsible for Failure of Anthocyanin Production in Onions (Allium cepa L.)

(2013) Jaehyuk Park et al.   Korean Journal of Horticultural Science & Technology

Genetic analyses of bolting in bulb onion (Allium cepa L.)

(2013) Samantha Baldwin et al.   THEORETICAL AND APPLIED GENETICS

Transcriptome sequencing to produce SNP-based genetic maps of onion

(2013) J. Duangjit et al.   THEORETICAL AND APPLIED GENETICS

Field high-throughput phenotyping: the new crop breeding frontier

(2013) José Luis Araus et al.   TRENDS IN PLANT SCIENCE

FLOWERING LOCUS T genes control onion bulb formation and flowering

(2013) Robyn Lee et al.   Nature Communications

Catalyzing plant science research with RNA-seq

(2013) Laetitia B. B. Martin et al.   Frontiers in Plant Science

AlliumMap-A comparative genomics resource for cultivated Allium vegetables

(2012) John McCallum et al.   BMC GENOMICS

A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)

(2012) Samantha Baldwin et al.   BMC GENOMICS

Transcriptome analysis using next-generation sequencing

(2012) Kai-Oliver Mutz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Identification of two SCAR markers co-segregated with the dominant Ms and recessive ms alleles in onion (Allium cepa L.)

(2012) Yan Yan Yang et al.   EUPHYTICA

Development of robust genomic simple sequence repeat markers for estimation of genetic diversity within and among bulb onion (Allium cepa L.) populations

(2012) Samantha Baldwin et al.   MOLECULAR BREEDING

Can genomics boost productivity of orphan crops?

(2012) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

The genetic basis of flowering responses to seasonal cues

(2012) Fernando Andrés et al.   NATURE REVIEWS GENETICS

Identification of differential resistance to sixFusarium oxysporumf. sp.cepaeisolates in commercial onion cultivars through the development of a rapid seedling assay

(2012) A. Taylor et al.   PLANT PATHOLOGY

Alien genes introgression and development of alien monosomic addition lines from a threatened species, Allium roylei Stearn, to Allium cepa L.

(2012) Hoa Q. Vu et al.   THEORETICAL AND APPLIED GENETICS

Accessing complex crop genomes with next-generation sequencing

(2012) David Edwards et al.   THEORETICAL AND APPLIED GENETICS

Chromosomal Organization and Sequence Diversity of Genes Encoding Lachrymatory Factor Synthase in Allium cepa L.

(2012) Noriya Masamura et al.   G3-Genes Genomes Genetics

Molecular breeding of healthy vegetables

(2011) Irwin L Goldman   EMBO REPORTS

Development of simple PCR-based markers linked to the Ms locus, a restorer-of-fertility gene in onion (Allium cepa L.)

(2011) Haejeen Bang et al.   EUPHYTICA

Onion Thrips (Thysanoptera: Thripidae): A Global Pest of Increasing Concern in Onion

(2011) John Diaz-Montano et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

The expression of pectin methylesterase in onion flower buds is associated with the dominant male-fertility restoration allele

(2011) Yumeng Huo et al.   PLANT BREEDING

Production of novel alloplasmic male sterile lines in Allium cepa harbouring the cytoplasm from Allium roylei

(2011) Hao Q. Vu et al.   PLANT BREEDING

Reverse genetics techniques: engineering loss and gain of gene function in plants

(2010) E. Gilchrist et al.   Briefings in Functional Genomics

Accessing genetic diversity for crop improvement

(2010) JC Glaszmann et al.   CURRENT OPINION IN PLANT BIOLOGY

Microsatellite markers: an overview of the recent progress in plants

(2010) Rajwant K. Kalia et al.   EUPHYTICA

Microsatellite marker based analysis of genetic diversity in short day tropical Indian onion and cross amplification in related Allium spp.

(2010) Anil Khar et al.   GENETIC RESOURCES AND CROP EVOLUTION

Plant photonics: application of optical coherence tomography to monitor defects and rots in onion

(2010) I.V. Meglinski et al.   LASER PHYSICS LETTERS

Conservation of Arabidopsis thaliana Photoperiodic Flowering Time Genes in Onion (Allium cepa L.)

(2010) Andrew Taylor et al.   PLANT AND CELL PHYSIOLOGY

Genetic variation for bulb size, soluble solids content and pungency in the Spanish sweet onion variety Fuentes de Ebro. Response to selection for low pungency

(2010) C. Mallor et al.   PLANT BREEDING

Crop genome sequencing: lessons and rationales

(2010) Catherine Feuillet et al.   TRENDS IN PLANT SCIENCE

Effect of scale color on the antioxidant capacity of onions

(2009) Ali Fuat Gökçe et al.   SCIENTIA HORTICULTURAE

Aspects of interspecific hybridization within edible Alliaceae

(2008) Alicja Chuda et al.   ACTA PHYSIOLOGIAE PLANTARUM

Genetic variation among Fusarium isolates from onion, and resistance to Fusarium basal rot in related Allium species

(2008) Guillermo A. Galván et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Differences in resistance in onion cultivars to pink root rot disease in Iran

(2008) M. Nasr Esfahani et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Pilot sequencing of onion genomic DNA reveals fragments of transposable elements, low gene densities, and significant gene enrichment after methyl filtration

(2008) Jernej Jakše et al.   MOLECULAR GENETICS AND GENOMICS

Silencing Onion Lachrymatory Factor Synthase Causes a Significant Change in the Sulfur Secondary Metabolite Profile

(2008) C. C. Eady et al.   PLANT PHYSIOLOGY

Identification of a novel chimeric gene, orf725, and its use in development of a molecular marker for distinguishing among three cytoplasm types in onion (Allium cepa L.)

(2008) Sunggil Kim et al.   THEORETICAL AND APPLIED GENETICS