Taxonomic identification of algae (morphological and molecular): species concepts, methodologies, and their implications for ecological bioassessment

Roles of benthic algae in the structure, function, and assessment of stream ecosystems affected by acid mine drainage

(2014) Nathan J. Smucker et al.   JOURNAL OF PHYCOLOGY

Ecological assessments with algae: a review and synthesis

(2014) Jan Stevenson   JOURNAL OF PHYCOLOGY

The unappreciated, fundamentally analytical nature of taxonomy and the implications for the inventory of biodiversity

(2013) Ronald Sluys   BIODIVERSITY AND CONSERVATION

Typification ofCocconeis lineataandCocconeis euglypta(Bacillariophyta)

(2013) Oscar E. Romero et al.   DIATOM RESEARCH

Bioindicators in marine waters: Benthic diatoms as a tool to assess water quality from eutrophic to oligotrophic coastal ecosystems

(2013) Catherine Desrosiers et al.   ECOLOGICAL INDICATORS

Using algal metrics and biomass to evaluate multiple ways of defining concentration-based nutrient criteria in streams and their ecological relevance

(2013) Nathan J. Smucker et al.   ECOLOGICAL INDICATORS

Sensitive and substrate-specific detection of metabolically active microorganisms in natural microbial consortia using community isotope arrays

(2013) Dieter M. Tourlousse et al.   FEMS MICROBIOLOGY LETTERS

Identity and phylogenetic placement ofSpirogyraspecies (Zygnematophyceae, Charophyta) from California streams and elsewhere1

(2013) Rosalina Stancheva et al.   JOURNAL OF PHYCOLOGY

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

(2013) L. Kermarrec et al.   Molecular Ecology Resources

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Evolution of Red Algal Plastid Genomes: Ancient Architectures, Introns, Horizontal Gene Transfer, and Taxonomic Utility of Plastid Markers

(2013) Jan Janouškovec et al.   PLoS One

A multimetric index of lake diatom condition based on surface-sediment assemblages

(2013) R. Jan Stevenson et al.   Freshwater Science

Comment on “Acquiring DNA sequence data from dried archival red algae (Florideophyceae) for the purpose of applying available names to contemporary genetic species: a critical assessment” 1Appears in Botany 90(3): 191–203. doi:10.1139/b11-079.

(2012) Jeffery R. Hughey et al.   Botany

Morphology and identity of some ecologically important smallNitzschiaspecies

(2012) Rosa Trobajo et al.   DIATOM RESEARCH

Consistency and sensitivity of stream periphyton community structural and functional responses to nutrient enrichment

(2012) Craig E. Nelson et al.   ECOLOGICAL APPLICATIONS

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

(2012) Jean-François Mangot et al.   ENVIRONMENTAL MICROBIOLOGY

Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?

(2012) Tor Carlsen et al.   Fungal Ecology

DIATMOD: diatom predictive model for quality assessment of Portuguese running waters

(2012) Salomé F. P. Almeida et al.   HYDROBIOLOGIA

A novel quantification method for stream-inhabiting, non-diatom benthic algae, and its application in bioassessment

(2012) Rosalina Stancheva et al.   HYDROBIOLOGIA

Synergistic effects of reserves and connectivity on ecological resilience

(2012) Andrew D. Olds et al.   JOURNAL OF APPLIED ECOLOGY

Algal taxonomy: a road to nowhere?

(2012) Olivier De Clerck et al.   JOURNAL OF PHYCOLOGY

Do macrophytes, diatoms and non-diatom benthic algae give redundant information? Results from a case study in Poland

(2012) Susanne C. Schneider et al.   LIMNOLOGICA

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding

(2012) H. R. TAYLOR et al.   Molecular Ecology Resources

An algal model for predicting attainment of tiered biological criteria of Maine's streams and rivers

(2012) Thomas J. Danielson et al.   Freshwater Science

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

Biomonitoring river diatoms: Implications of taxonomic resolution

(2011) Frédéric Rimet et al.   ECOLOGICAL INDICATORS

RNA-Mediated Silencing in Algae: Biological Roles and Tools for Analysis of Gene Function

(2011) Heriberto Cerutti et al.   EUKARYOTIC CELL

The role of live diatoms in bioassessment: a large-scale study of Western US streams

(2011) Nadezhda D. Gillett et al.   HYDROBIOLOGIA

The periphyton index of trophic status PIT: a new eutrophication metric based on non-diatomaceous benthic algae in Nordic rivers

(2011) Susanne C. Schneider et al.   HYDROBIOLOGIA

Recent views on river pollution and diatoms

(2011) Frédéric Rimet   HYDROBIOLOGIA

Survey of the Efficacy of a Short Fragment of the rbcL Gene as a Supplemental DNA Barcode for Diatoms

(2011) Michael L. MacGillivary et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Intra- and Interspecific Competition for Nutrients and Light in Diatom Cultures

(2011) Kalina M. Manoylov   JOURNAL OF FRESHWATER ECOLOGY

GenBank

(2011) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols

(2011) Jonas Zimmermann et al.   ORGANISMS DIVERSITY & EVOLUTION

Inferring Ecological Processes from Taxonomic, Phylogenetic and Functional Trait β-Diversity

(2011) James C. Stegen et al.   PLoS One

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Barcoding Diatoms: Exploring Alternatives to COI-5P

(2011) Sarah E. Hamsher et al.   PROTIST

Time to change how we describe biodiversity

(2011) Andrew R. Deans et al.   TRENDS IN ECOLOGY & EVOLUTION

The use of partialcox1,rbcL and LSU rDNA sequences for phylogenetics and species identification within theNitzschia paleaspecies complex (Bacillariophyceae)

(2010) Rosa Trobajo et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Inadequacy of size distributions of stream benthic diatoms for environmental monitoring

(2010) Isabelle Lavoie et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioindication in Norwegian rivers using non-diatomaceous benthic algae: The acidification index periphyton (AIP)

(2009) S. Schneider et al.   ECOLOGICAL INDICATORS

Use of diatoms to assess agricultural and coal mining impacts on streams and a multiassemblage case study

(2009) Nathan J. Smucker et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Barcoding diatoms: Is there a good marker?

(2009) MÓNICA B. J. MONIZ et al.   Molecular Ecology Resources

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Morphological, genetic and mating diversity within the widespread bioindicator Nitzschia palea (Bacillariophyceae)

(2009) Rosa Trobajo et al.   PHYCOLOGIA

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effect of excluding diatom taxa and reducing taxonomic resolution on multivariate analyses and stream bioassessment

(2008) Isabelle Lavoie et al.   ECOLOGICAL INDICATORS

Evaluating different approaches that test whether microbial communities have the same structure

(2008) Patrick D Schloss   ISME Journal

A MOLECULAR SYSTEMATIC APPROACH TO EXPLORE DIVERSITY WITHIN THESELLAPHORA PUPULASPECIES COMPLEX (BACILLARIOPHYTA)

(2008) Katharine M. Evans et al.   JOURNAL OF PHYCOLOGY

Development of diatom indicators of ecological conditions for streams of the western US

(2008) R. Jan Stevenson et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Biological assessments of Appalachian streams based on predictive models for fish, macroinvertebrate, and diatom assemblages

(2007) Daren M. Carlisle et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY