Conservation and divergence of gene expression plasticity followingc. 140 million years of evolution in lodgepole pine (Pinus contorta) and interior spruce (Picea glauca × Picea engelmannii)

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation

(2014) J. L. Wegrzyn et al.   GENETICS

Differential gene expression patterns in white spruce newly formed tissue on board the International Space Station

(2013) Jean Beaulieu et al.   ADVANCES IN SPACE RESEARCH

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

(2013) Inanc Birol et al.   BIOINFORMATICS

Comparative gene expression between two yeast species

(2013) Yuanfang Guan et al.   BMC GENOMICS

Evolutionary and plastic responses to climate change in terrestrial plant populations

(2013) Steven J. Franks et al.   Evolutionary Applications

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives

(2013) Kathryn A. Hodgins et al.   Molecular Ecology Resources

Adaptation and exogenous selection in aPicea glauca×Picea engelmanniihybrid zone: implications for forest management under climate change

(2013) Amanda R. De La Torre et al.   NEW PHYTOLOGIST

Sequencing of Sitka spruce (Picea sitchensis) cDNA libraries constructed from autumn buds and foliage reveals autumn-specific spruce transcripts

(2013) K. E. Reid et al.   Tree Genetics & Genomes

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

Spatially variable natural selection and the divergence between parapatric subspecies of lodgepole pine (Pinus contorta , Pinaceae)

(2012) Andrew J. Eckert et al.   AMERICAN JOURNAL OF BOTANY

Transcriptome profiling in conifers and the PiceaGenExpress database show patterns of diversification within gene families and interspecific conservation in vascular gene expression

(2012) Elie Raherison et al.   BMC GENOMICS

Conservation planning under climate change: accounting for adaptive potential and migration capacity in species distribution models

(2012) Andreas Hamann et al.   DIVERSITY AND DISTRIBUTIONS

Projecting future distributions of ecosystem climate niches: Uncertainties and management applications

(2012) Tongli Wang et al.   FOREST ECOLOGY AND MANAGEMENT

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Comparative co-expression analysis in plant biology

(2012) SARA MOVAHEDI et al.   PLANT CELL AND ENVIRONMENT

Genetical Genomics Identifies the Genetic Architecture for Growth and Weevil Resistance in Spruce

(2012) Ilga Porth et al.   PLoS One

Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression

(2011) Zhao Lai et al.   AMERICAN JOURNAL OF BOTANY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Comparison of fixed and focal point seed transfer systems for reforestation and assisted migration: a case study for interior spruce in British Columbia

(2011) Nicholas K. Ukrainetz et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Inferring regulatory mechanisms from patterns of evolutionary divergence

(2011) I. Tirosh et al.   Molecular Systems Biology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Molecular events of apical bud formation in white spruce, Picea glauca

(2010) WALID EL KAYAL et al.   PLANT CELL AND ENVIRONMENT

Historical and projected climate data for natural resource management in western Canada

(2009) Michael S. Mbogga et al.   AGRICULTURAL AND FOREST METEOROLOGY

Toward a population genetic framework of developmental evolution: the costs, limits, and consequences of phenotypic plasticity

(2009) Emilie C. Snell-Rood et al.   BIOESSAYS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress

(2009) Harkamal Walia et al.   BMC GENOMICS

Comparison of next generation sequencing technologies for transcriptome characterization

(2009) P Kerr Wall et al.   BMC GENOMICS

A global overview of drought and heat-induced tree mortality reveals emerging climate change risks for forests

(2009) Craig D. Allen et al.   FOREST ECOLOGY AND MANAGEMENT

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Heat stress-responsive transcriptome analysis in heat susceptible and tolerant wheat (Triticum aestivum L.) by using Wheat Genome Array

(2008) Dandan Qin et al.   BMC GENOMICS

Impacts of a regional drought on the productivity, dieback, and biomass of western Canadian aspen forests

(2008) E. H. (Ted) Hogg et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

(2008) MARIE-CLAIRE NAMROUD et al.   MOLECULAR ECOLOGY

Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis)

(2008) Jason A. Holliday et al.   NEW PHYTOLOGIST

Forests and Climate Change: Forcings, Feedbacks, and the Climate Benefits of Forests

(2008) G. B. Bonan   SCIENCE