An RNA-seq protocol to identify mRNA expression changes in mouse diaphyseal bone: Applications in mice with bone property alteringLrp5mutations

Sequencing and de novo analysis of the Chinese Sika deer antler-tip transcriptome during the ossification stage using Illumina RNA-Seq technology

(2012) Baojin Yao et al.   BIOTECHNOLOGY LETTERS

Evolution of the osteoblast: skeletogenesis in gar and zebrafish

(2012) B Frank Eames et al.   BMC EVOLUTIONARY BIOLOGY

Mechanotransduction in bone tissue: The A214V and G171V mutations in Lrp5 enhance load-induced osteogenesis in a surface-selective manner

(2012) Paul J. Niziolek et al.   BONE

Differential load-regulated global gene expression in mouse trabecular osteocytes

(2012) Elad Wasserman et al.   BONE

Gene Expression Profiles in Paired Gingival Biopsies from Periodontitis-Affected and Healthy Tissues Revealed by Massively Parallel Sequencing

(2012) Haleh Davanian et al.   PLoS One

Interleukin 34 expression is associated with synovitis severity in rheumatoid arthritis patients

(2011) M Chemel et al.   ANNALS OF THE RHEUMATIC DISEASES

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

(2011) Marten Jäger et al.   BMC GENOMICS

Analysis of multiple bone responses to graded strains above functional levels, and to disuse, in mice in vivo show that the human Lrp5 G171V High Bone Mass mutation increases the osteogenic response to loading but that lack of Lrp5 activity reduces it

(2011) Leanne K. Saxon et al.   BONE

Erythropoietin mediated bone formation is regulated by mTOR signaling

(2011) Jinkoo Kim et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Lrp5 functions in bone to regulate bone mass

(2011) Yajun Cui et al.   NATURE MEDICINE

Matrix-embedded cells control osteoclast formation

(2011) Jinhu Xiong et al.   NATURE MEDICINE

Identification of Tumor Suppressors and Oncogenes from Genomic and Epigenetic Features in Ovarian Cancer

(2011) Kazimierz O. Wrzeszczynski et al.   PLoS One

Wnt Antagonists Bind through a Short Peptide to the First β-Propeller Domain of LRP5/6

(2011) Eric Bourhis et al.   STRUCTURE

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

(2011) Daniel Aird et al.   GENOME BIOLOGY

MDM4 overexpression contributes to synoviocyte proliferation in patients with rheumatoid arthritis

(2010) Nanwei Xu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Hypoxia-inducible factor regulates osteoclast-mediated bone resorption: role of angiopoietin-like 4

(2010) Helen J. Knowles et al.   FASEB JOURNAL

Novel Cleft Susceptibility Genes in Chromosome 6q

(2010) A. Letra et al.   JOURNAL OF DENTAL RESEARCH

CXC Chemokine Ligand 2 Induced by Receptor Activator of NF- B Ligand Enhances Osteoclastogenesis

(2010) J. Ha et al.   JOURNAL OF IMMUNOLOGY

Role of zinc in cellular zinc trafficking and mineralization in a murine osteoblast-like cell line

(2010) Masashi Nagata et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Interleukin-34 is expressed by giant cell tumours of bone and plays a key role in RANKL-induced osteoclastogenesis

(2010) Marc Baud'Huin et al.   JOURNAL OF PATHOLOGY

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Bone development and inflammatory disease is regulated by AP-1 (Fos/Jun)

(2009) E F Wagner   ANNALS OF THE RHEUMATIC DISEASES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Interaction of dietary zinc and intracellular binding protein metallothionein in postnatal bone growth

(2009) Laura Fong et al.   BONE

Neuropeptide Y is expressed by osteocytes and can inhibit osteoblastic activity

(2009) John C. Igwe et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Novel Regulators of Fgf23 Expression and Mineralization in Hyp Bone

(2009) Shiguang Liu et al.   MOLECULAR ENDOCRINOLOGY

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

(2009) Iwanka Kozarewa et al.   NATURE METHODS

Lrp4, a Novel Receptor for Dickkopf 1 and Sclerostin, Is Expressed by Osteoblasts and Regulates Bone Growth and Turnover In Vivo

(2009) Hong Y. Choi et al.   PLoS One

Temporomandibular joint formation requires two distinct hedgehog-dependent steps

(2009) P. Purcell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mouse specific lung tumors from CYP2F2-mediated cytotoxic metabolism: An endpoint/toxic response where data from multiple chemicals converge to support a mode of action

(2009) George Cruzan et al.   REGULATORY TOXICOLOGY AND PHARMACOLOGY

Carboxypeptidase Z (CPZ) Links Thyroid Hormone and Wnt Signaling Pathways in Growth Plate Chondrocytes

(2008) Lai Wang et al.   JOURNAL OF BONE AND MINERAL RESEARCH

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Direct multiplexed measurement of gene expression with color-coded probe pairs

(2008) Gary K Geiss et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

(2008) J. C. Dohm et al.   NUCLEIC ACIDS RESEARCH

Induction of IgG3 to LPS via Toll-Like Receptor 4 Co-Stimulation

(2008) Francisco J. Quintana et al.   PLoS One

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE