Modulation of Gene Expression Regulated by the Transcription Factor NF-κB/RelA

NleB, a Bacterial Effector with Glycosyltransferase Activity, Targets GAPDH Function to Inhibit NF-κB Activation

(2013) Xiaofei Gao et al.   Cell Host & Microbe

A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq

(2013) Jun Yang et al.   NUCLEIC ACIDS RESEARCH

Relaxation Response Induces Temporal Transcriptome Changes in Energy Metabolism, Insulin Secretion and Inflammatory Pathways

(2013) Manoj K. Bhasin et al.   PLoS One

Inferring gene regulatory networks by ANOVA

(2012) Robert Küffner et al.   BIOINFORMATICS

The transcription factor Spi-B regulates human plasmacytoid dendritic cell survival through direct induction of the antiapoptotic gene BCL2-A1

(2012) J. J. Karrich et al.   BLOOD

Inactivation of ribosomal protein L22 promotes transformation by induction of the stemness factor, Lin28B

(2012) S. Rao et al.   BLOOD

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

(2012) D. Marbach et al.   GENOME RESEARCH

Nuclear to Cytoplasmic Translocation of Heterogeneous Nuclear Ribonucleoprotein U Enhances TLR-Induced Proinflammatory Cytokine Production by Stabilizing mRNAs in Macrophages

(2012) W. Zhao et al.   JOURNAL OF IMMUNOLOGY

hnRNP C Tetramer Measures RNA Length to Classify RNA Polymerase II Transcripts for Export

(2012) A. McCloskey et al.   SCIENCE

MyoD-dependent regulation of NF-κB activity couples cell-cycle withdrawal to myogenic differentiation

(2012) Maura H Parker et al.   Skeletal Muscle

RIP: the regulatory interaction predictor—a machine learning-based approach for predicting target genes of transcription factors

(2011) Tobias Bauer et al.   BIOINFORMATICS

Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information

(2011) Xiujun Zhang et al.   BIOINFORMATICS

Ribosome-Mediated Specificity in Hox mRNA Translation and Vertebrate Tissue Patterning

(2011) Nadya Kondrashov et al.   CELL

Inflammatory links between obesity and metabolic disease

(2011) Carey N. Lumeng et al.   JOURNAL OF CLINICAL INVESTIGATION

RelA Ser276 Phosphorylation-Coupled Lys310 Acetylation Controls Transcriptional Elongation of Inflammatory Cytokines in Respiratory Syncytial Virus Infection

(2011) A. R. Brasier et al.   JOURNAL OF VIROLOGY

Quantification of Activated NF-κB/RelA Complexes Using ssDNA Aptamer Affinity – Stable Isotope Dilution—Selected Reaction Monitoring—Mass Spectrometry

(2011) Yingxin Zhao et al.   MOLECULAR & CELLULAR PROTEOMICS

Crosstalk in NF-κB signaling pathways

(2011) Andrea Oeckinghaus et al.   NATURE IMMUNOLOGY

Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis

(2011) Logan J. Everett et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

Identification of a novel pro-apoptotic role of NF-κB in the regulation of TRAIL- and CD95-mediated apoptosis of glioblastoma cells

(2011) C Jennewein et al.   ONCOGENE

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data

(2011) Chao Cheng et al.   PLoS Computational Biology

Mimosa: Mixture model of co-expression to detect modulators of regulatory interaction

(2010) Matthew Hansen et al.   Algorithms for Molecular Biology

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks

(2010) Yong Li et al.   BMC BIOINFORMATICS

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

Nuclear factor- B signaling and ezrin are essential for L1-mediated metastasis of colon cancer cells

(2010) N. Gavert et al.   JOURNAL OF CELL SCIENCE

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Discovering modulators of gene expression

(2010) Özgün Babur et al.   NUCLEIC ACIDS RESEARCH

B23 acts as a nucleolar stress sensor and promotes cell survival through its dynamic interaction with hnRNPU and hnRNPA1

(2010) Z Yao et al.   ONCOGENE

Tumor Necrosis Factor-α Potentiates RhoA-Mediated Monocyte Transmigratory Activity In Vivo at a Picomolar Level

(2009) Sunny Lim et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

NF-κB and estrogen receptor α interactions: Differential function in estrogen receptor-negative and -positive hormone-independent breast cancer cells

(2009) Nathalie Gionet et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Intracellular Receptor for Human Host Defense Peptide LL-37 in Monocytes

(2009) N. Mookherjee et al.   JOURNAL OF IMMUNOLOGY

Genome-wide identification of post-translational modulators of transcription factor activity in human B cells

(2009) Kai Wang et al.   NATURE BIOTECHNOLOGY

PPI spider: A tool for the interpretation of proteomics data in the context of protein-protein interaction networks

(2009) Alexey V. Antonov et al.   PROTEOMICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information

(2008) Weijun Luo et al.   BMC BIOINFORMATICS

Transcription Factor E2-2 Is an Essential and Specific Regulator of Plasmacytoid Dendritic Cell Development

(2008) Babacar Cisse et al.   CELL

hnRNP A1 regulates UV-induced NF-κB signalling through destabilization of cIAP1 mRNA

(2008) T T Zhao et al.   CELL DEATH AND DIFFERENTIATION

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY