Evolutionary insights into host–pathogen interactions from mammalian sequence data
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Title
Evolutionary insights into host–pathogen interactions from mammalian sequence data
Authors
Keywords
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Journal
NATURE REVIEWS GENETICS
Volume 16, Issue 4, Pages 224-236
Publisher
Springer Nature
Online
2015-03-18
DOI
10.1038/nrg3905
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Note: Only part of the references are listed.- The Red Queen's long race: human adaptation to pathogen pressure
- (2014) Katherine J Siddle et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
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- (2014) Jeannette L. Tenthorey et al. MOLECULAR CELL
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- (2014) Muriel Dietrich et al. MOLECULAR ECOLOGY
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- (2014) Elinor K. Karlsson et al. NATURE REVIEWS GENETICS
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- (2014) J. C. Gray et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Escape from bacterial iron piracy through rapid evolution of transferrin
- (2014) M. F. Barber et al. SCIENCE
- Positive selection of primate genes that promote HIV-1 replication
- (2014) Nicholas R. Meyerson et al. VIROLOGY
- An Evolutionary Analysis of Antigen Processing and Presentation across Different Timescales Reveals Pervasive Selection
- (2014) Diego Forni et al. PLoS Genetics
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- (2014) Melvyn W. Yap et al. PLoS Pathogens
- Contrasted evolutionary histories of two Toll-like receptors (Tlr4 and Tlr7) in wild rodents (MURINAE)
- (2013) Alena Fornůsková et al. BMC EVOLUTIONARY BIOLOGY
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- (2013) Pepijn Luijckx et al. CURRENT BIOLOGY
- Insights from natural host–parasite interactions: The Drosophila model
- (2013) Erin S. Keebaugh et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
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- (2013) Diego Forni et al. IMMUNITY
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- (2013) Rachele Cagliani et al. JOURNAL OF MOLECULAR BIOLOGY
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- (2013) Rachele Cagliani et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2013) Justin D. Smith et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2013) A. Lu et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2013) Xing-Yi Ge et al. NATURE
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- (2013) Guangwen Lu et al. NATURE
- Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection
- (2013) Caroline Goujon et al. NATURE
- Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC
- (2013) V. Stalin Raj et al. NATURE
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- (2013) Julie E. Samson et al. NATURE REVIEWS MICROBIOLOGY
- Multiple Cationic Amphiphiles Induce a Niemann-Pick C Phenotype and Inhibit Ebola Virus Entry and Infection
- (2013) Charles J. Shoemaker et al. PLoS One
- Adaptive evolution of bat dipeptidyl peptidase 4 (dpp4): implications for the origin and emergence of Middle East respiratory syndrome coronavirus
- (2013) Jie Cui et al. Virology Journal
- Genome analysis reveals insights into physiology and longevity of the Brandt’s bat Myotis brandtii
- (2013) Inge Seim et al. Nature Communications
- Origins of HIV and the AIDS Pandemic
- (2013) P. M. Sharp et al. Cold Spring Harbor Perspectives in Medicine
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- (2013) Ann Demogines et al. PLOS BIOLOGY
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- (2012) Lee R. Machado et al. AMERICAN JOURNAL OF HUMAN GENETICS
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- (2012) Matthew D. Daugherty et al. Annual Review of Genetics
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- (2012) Nasser M Al-Daghri et al. BMC Medicine
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- (2012) Patrick S. Mitchell et al. Cell Host & Microbe
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- (2012) Rebecca L. Brunette et al. JOURNAL OF EXPERIMENTAL MEDICINE
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- (2012) M. Kajikawa et al. JOURNAL OF VIROLOGY
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- (2012) A. Demogines et al. JOURNAL OF VIROLOGY
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- (2012) B. P. Blackburne et al. MOLECULAR BIOLOGY AND EVOLUTION
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- A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection
- (2011) Sergei L. Kosakovsky Pond et al. MOLECULAR BIOLOGY AND EVOLUTION
- Small molecule inhibitors reveal Niemann–Pick C1 is essential for Ebola virus infection
- (2011) Marceline Côté et al. NATURE
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- (2011) Lin-Fa Wang et al. Current Opinion in Virology
- Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution
- (2011) Matteo Fumagalli et al. PLoS Genetics
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- (2011) Torsten Schaller et al. PLoS Pathogens
- A Threonine-Based Targeting Signal in the Human CD1d Cytoplasmic Tail Controls Its Functional Expression
- (2010) J. Liu et al. JOURNAL OF IMMUNOLOGY
- Structural Basis for Langerin Recognition of Diverse Pathogen and Mammalian Glycans through a Single Binding Site
- (2010) Hadar Feinberg et al. JOURNAL OF MOLECULAR BIOLOGY
- Adaptation and Constraint at Toll-Like Receptors in Primates
- (2010) G. Wlasiuk et al. MOLECULAR BIOLOGY AND EVOLUTION
- Statistical Properties of the Branch-Site Test of Positive Selection
- (2010) Z. Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection
- (2010) W. Fletcher et al. MOLECULAR BIOLOGY AND EVOLUTION
- Antagonistic coevolution accelerates molecular evolution
- (2010) Steve Paterson et al. NATURE
- Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication
- (2010) Alexander Karlas et al. NATURE
- Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment
- (2009) Adrian Schneider et al. Genome Biology and Evolution
- Phylogenies reveal new interpretation of speciation and the Red Queen
- (2009) Chris Venditti et al. NATURE
- From evolutionary genetics to human immunology: how selection shapes host defence genes
- (2009) Luis B. Barreiro et al. NATURE REVIEWS GENETICS
- The Red Queen and the Court Jester: Species Diversity and the Role of Biotic and Abiotic Factors Through Time
- (2009) M. J. Benton SCIENCE
- Variation matters: TLR structure and species-specific pathogen recognition
- (2009) Dirk Werling et al. TRENDS IN IMMUNOLOGY
- Global trends in emerging infectious diseases
- (2008) Kate E. Jones et al. NATURE
- Patterns of Positive Selection in Six Mammalian Genomes
- (2008) Carolin Kosiol et al. PLoS Genetics
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