Positive Selection during the Evolution of the Blood Coagulation Factors in the Context of Their Disease-Causing Mutations

Patterns of Positive Selection in Seven Ant Genomes

(2014) Julien Roux et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Mechanisms of Disease-Causing Missense Mutations

(2013) Shannon Stefl et al.   JOURNAL OF MOLECULAR BIOLOGY

An interactive mutation database for human coagulation factor IX provides novel insights into the phenotypes and genetics of hemophilia B

(2013) P. M. Rallapalli et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

Factor XII promotes blood coagulation independent of factor XI in the presence of long-chain polyphosphates

(2013) C. Puy et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

Selectome update: quality control and computational improvements to a database of positive selection

(2013) Sébastien Moretti et al.   NUCLEIC ACIDS RESEARCH

Using HSV-1 Genome Phylogenetics to Track Past Human Migrations

(2013) Aaron W. Kolb et al.   PLoS One

Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset

(2013) Tjaart A. P. de Beer et al.   PLoS Computational Biology

Comprehensive Genetic Dissection of the Hemocyte Immune Response in the Malaria Mosquito Anopheles gambiae

(2013) Fabrizio Lombardo et al.   PLoS Pathogens

Tissue factor and glycoprotein C on herpes simplex virus type 1 are protease-activated receptor 2 cofactors that enhance infection

(2012) M. R. Sutherland et al.   BLOOD

Polyphosphate: an ancient molecule that links platelets, coagulation, and inflammation

(2012) J. H. Morrissey et al.   BLOOD

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

(2012) Ian Sillitoe et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Genetic drift

(2011) Joanna Masel   CURRENT BIOLOGY

Adenovirus-Associated Virus Vector–Mediated Gene Transfer in Hemophilia B

(2011) Amit C. Nathwani et al.   NEW ENGLAND JOURNAL OF MEDICINE

Patterns of Positive Selection and Neutral Evolution in the Protein-Coding Genes of Tetraodon and Takifugu

(2011) Juan I. Montoya-Burgos   PLoS One

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

Mechanisms of genetically-based resistance to malaria

(2010) Carolina López et al.   GENE

The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection

(2010) W. Fletcher et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for an episodic model of protein sequence evolution

(2009) Romain A. Studer et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

AnophelesFibrinogen-related Proteins Provide Expanded Pattern Recognition Capacity against Bacteria and Malaria Parasites

(2009) Yuemei Dong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

(2008) R. A. Studer et al.   GENOME RESEARCH

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

Genomic Evidence for a Simpler Clotting Scheme in Jawless Vertebrates

(2008) Russell F. Doolittle et al.   JOURNAL OF MOLECULAR EVOLUTION

Selectome: a database of positive selection

(2008) E. Proux et al.   NUCLEIC ACIDS RESEARCH

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE

Patterns of Positive Selection in Six Mammalian Genomes

(2008) Carolin Kosiol et al.   PLoS Genetics