Improving tRNAscan-SE Annotation Results via Ensemble Classifiers

Pinpointing disease genes through phenomic and genomic data fusion

(2015) Rui Jiang et al.   BMC GENOMICS

miRNA-dis: microRNA precursor identification based on distance structure status pairs

(2015) Bin Liu et al.   Molecular BioSystems

repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects

(2014) Bin Liu et al.   BIOINFORMATICS

nDNA-prot: identification of DNA-binding proteins based on unbalanced classification

(2014) Li Song et al.   BMC BIOINFORMATICS

On languages generated by spiking neural P systems with weights

(2014) Xiangxiang Zeng et al.   INFORMATION SCIENCES

Representation of fluctuation features in pathological knee joint vibroarthrographic signals using kernel density modeling method

(2014) Shanshan Yang et al.   MEDICAL ENGINEERING & PHYSICS

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou’s PseAAC and Physicochemical Distance Transformation

(2014) Bin Liu et al.   Molecular Informatics

Spiking Neural P Systems with Thresholds

(2014) Xiangxiang Zeng et al.   NEURAL COMPUTATION

LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression

(2014) Qinghua Jiang et al.   NUCLEIC ACIDS RESEARCH

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

Secondary structure adventures with Carl Woese

(2014) Harry F Noller   RNA Biology

RAID: a comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction

(2014) X. Zhang et al.   RNA

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

Survey of MapReduce frame operation in bioinformatics

(2013) Q. Zou et al.   BRIEFINGS IN BIOINFORMATICS

Computational Approaches in Detecting Non- Coding RNA

(2013) Chunyu Wang et al.   CURRENT GENOMICS

BinMemPredict: a Web Server and Software for Predicting Membrane Protein Types

(2013) Quan Zou et al.   Current Proteomics

Classification of Knee Joint Vibration Signals Using Bivariate Feature Distribution Estimation and Maximal Posterior Probability Decision Criterion

(2013) Yunfeng Wu et al.   Entropy

Identifying Multi-Functional Enzyme by Hierarchical Multi-Label Classifier

(2013) Quan Zou et al.   Journal of Computational and Theoretical Nanoscience

Prediction of protein amidation sites by feature selection and analysis

(2013) Weiren Cui et al.   MOLECULAR GENETICS AND GENOMICS

LibD3C: Ensemble classifiers with a clustering and dynamic selection strategy

(2013) Chen Lin et al.   NEUROCOMPUTING

Projection-Based Ensemble Learning for Ordinal Regression

(2013) Maria Perez-Ortiz et al.   IEEE Transactions on Cybernetics

Performing Four Basic Arithmetic Operations With Spiking Neural P Systems

(2012) Xiangxiang Zeng et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

A Dynamic AdaBoost Algorithm With Adaptive Changes of Loss Function

(2012) Yunlong Gao et al.   IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS PART C-APPLICATIONS AND RE

RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction

(2012) Stefan Washietl et al.   NUCLEIC ACIDS RESEARCH

SINEBase: a database and tool for SINE analysis

(2012) Nikita S. Vassetzky et al.   NUCLEIC ACIDS RESEARCH

Prediction of Protein Domain with mRMR Feature Selection and Analysis

(2012) Bi-Qing Li et al.   PLoS One

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

(2012) Bin Liu et al.   PLoS One

Prediction of lysine ubiquitination with mRMR feature selection and analysis

(2011) Yudong Cai et al.   AMINO ACIDS

Recurrent Neural Network for Non-Smooth Convex Optimization Problems With Application to the Identification of Genetic Regulatory Networks

(2011) Long Cheng et al.   IEEE TRANSACTIONS ON NEURAL NETWORKS

Prediction of protein binding sites in protein structures using hidden Markov support vector machine

(2009) Bin Liu et al.   BMC BIOINFORMATICS

Exploiting three kinds of interface propensities to identify protein binding sites

(2009) Bin Liu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

(2008) Bin Liu et al.   BMC BIOINFORMATICS

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH

Predicting Subcellular Localization of Mycobacterial Proteins by Using Chous Pseudo Amino Acid Composition

(2008) Hao Lin et al.   PROTEIN AND PEPTIDE LETTERS