Discrimination of membrane transporter protein types using K-nearest neighbor method derived from the similarity distance of total diversity measure

Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition

(2015) Pan-Pan Zhu et al.   Molecular BioSystems

iTIS-PseTNC: A sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach

(2014) Ruifeng Xu et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

Prediction of Membrane Transport Proteins and Their Substrate Specificities Using Primary Sequence Information

(2014) Nitish K. Mishra et al.   PLoS One

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

iNitro-Tyr: Prediction of Nitrotyrosine Sites in Proteins with General Pseudo Amino Acid Composition

(2014) Yan Xu et al.   PLoS One

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

propy: a tool to generate various modes of Chou’s PseAAC

(2013) Dong-Sheng Cao et al.   BIOINFORMATICS

Bioinformatics approaches for functional annotation of membrane proteins

(2013) M. M. Gromiha et al.   BRIEFINGS IN BIOINFORMATICS

iCDI-PseFpt: Identify the channel–drug interaction in cellular networking with PseAAC and molecular fingerprints

(2013) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins

(2013) Wei-Zhong Lin et al.   Molecular BioSystems

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

The Transporter Classification Database

(2013) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition

(2013) Yan Xu et al.   PLoS One

AcalPred: A Sequence-Based Tool for Discriminating between Acidic and Alkaline Enzymes

(2013) Hao Lin et al.   PLoS One

iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteineS-nitrosylation sites in proteins

(2013) Yan Xu et al.   PeerJ

A similarity distance of diversity measure for discriminating mesophilic and thermophilic proteins

(2012) Yong-Chun Zuo et al.   AMINO ACIDS

Predicting Anatomical Therapeutic Chemical (ATC) Classification of Drugs by Integrating Chemical-Chemical Interactions and Similarities

(2012) Lei Chen et al.   PLoS One

iLoc-Gpos: A Multi-Layer Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Gram-Positive Bacterial Proteins

(2012) Zhi-Cheng Wu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties

(2011) Shu-An Chen et al.   BIOINFORMATICS

iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites

(2011) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites

(2011) Zhi-Cheng Wu et al.   Molecular BioSystems

Identification of Mannose Interacting Residues Using Local Composition

(2011) Sandhya Agarwal et al.   PLoS One

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Using auto covariance method for functional discrimination of membrane proteins based on evolution information

(2009) Li Yang et al.   AMINO ACIDS

Using K-minimum increment of diversity to predict secretory proteins of malaria parasite based on groupings of amino acids

(2009) Yong-Chun Zuo et al.   AMINO ACIDS

TransportTP: A two-phase classification approach for membrane transporter prediction and characterization

(2009) Haiquan Li et al.   BMC BIOINFORMATICS

Using reduced amino acid composition to predict defensin family and subfamily: Integrating similarity measure and structural alphabet

(2009) Yong-Chun Zuo et al.   PEPTIDES

Genomic Inventory and Transcriptional Analysis of Medicago truncatula Transporters

(2009) V. A. Benedito et al.   PLANT PHYSIOLOGY

A nearest neighbor approach for automated transporter prediction and categorization from protein sequences

(2008) H. Li et al.   BIOINFORMATICS

Functional discrimination of membrane proteins using machine learning techniques

(2008) M Michael Gromiha et al.   BMC BIOINFORMATICS

The mode of antifungal action of plant, insect and human defensins

(2008) A. M. Aerts et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Comprehensiveab initiocalculation and simulation on the low-lying electronic states of TlX (X = F, Cl, Br, I, and At)

(2008) Wenli Zou et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Prediction of presynaptic and postsynaptic neurotoxins by the increment of diversity

(2008) Lei Yang et al.   TOXICOLOGY IN VITRO