Adaptive Modifications of Muscle Phenotype in High-Altitude Deer Mice Are Associated with Evolved Changes in Gene Regulation

Regulatory mechanisms of metabolic flexibility in the dark-eyed junco (Junco hyemalis)

(2015) M. Stager et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Intraspecific Polymorphism, Interspecific Divergence, and the Origins of Function-Altering Mutations in Deer Mouse Hemoglobin

(2015) Chandrasekhar Natarajan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Phylogenetics and the Diversification of Hummingbirds

(2014) Jimmy A. McGuire et al.   CURRENT BIOLOGY

Extensive Error in the Number of Genes Inferred from Draft Genome Assemblies

(2014) James F. Denton et al.   PLoS Computational Biology

Aldehyde dehydrogenase-2 inhibition blocks remote preconditioning in experimental and human models

(2013) Hussain Contractor et al.   BASIC RESEARCH IN CARDIOLOGY

New Insights into the Mechanisms Underlying Vascular and Cardiac Effects of Urocortin

(2013) Ignacio Diaz et al.   Current Vascular Pharmacology

FUNCTIONAL GENOMICS OF ADAPTATION TO HYPOXIC COLD-STRESS IN HIGH-ALTITUDE DEER MICE: TRANSCRIPTOMIC PLASTICITY AND THERMOGENIC PERFORMANCE

(2013) Zachary A. Cheviron et al.   EVOLUTION

Thymosin beta4 induces angiogenesis through Notch signaling in endothelial cells

(2013) Shumin Lv et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Gene expression profiling of gastrocnemius of “minimuscle” mice

(2013) Jatin G. Burniston et al.   PHYSIOLOGICAL GENOMICS

The MRC1/CD68 Ratio Is Positively Associated with Adipose Tissue Lipogenesis and with Muscle Mitochondrial Gene Expression in Humans

(2013) José María Moreno-Navarrete et al.   PLoS One

Importance of mitochondrial PO2 in maximal O2 transport and utilization: A theoretical analysis

(2013) I. Cano et al.   RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY

Epistasis Among Adaptive Mutations in Deer Mouse Hemoglobin

(2013) C. Natarajan et al.   SCIENCE

Do mice bred selectively for high locomotor activity have a greater reliance on lipids to power submaximal aerobic exercise?

(2012) Nicole M. Templeman et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Increase in Carbohydrate Utilization in High-Altitude Andean Mice

(2012) Marie-Pierre Schippers et al.   CURRENT BIOLOGY

Exploring the role of physiology and biotic interactions in determining elevational ranges of tropical animals

(2012) Jill E. Jankowski et al.   ECOGRAPHY

Mitochondrial function in human skeletal muscle following high-altitude exposure

(2012) Robert A. Jacobs et al.   EXPERIMENTAL PHYSIOLOGY

Metabolism in the age of 'omes'

(2012) R. K. Suarez et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Contributions of phenotypic plasticity to differences in thermogenic performance between highland and lowland deer mice

(2012) Z. A. Cheviron et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice

(2012) Z. A. Cheviron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature during embryonic development has persistent effects on thermal acclimation capacity in zebrafish

(2012) G. R. Scott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vascular remodelling in human skeletal muscle

(2011) Thomas Gustafsson   BIOCHEMICAL SOCIETY TRANSACTIONS

Chronic cold acclimation increases thermogenic capacity, non-shivering thermogenesis and muscle citrate synthase activity in both wild-type and brown adipose tissue deficient mice

(2011) P.M. Mineo et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Expression of angiogenic regulators and skeletal muscle capillarity in selectively bred high aerobic capacity mice

(2011) Gerald N. Audet et al.   EXPERIMENTAL PHYSIOLOGY

Acclimatization of skeletal muscle mitochondria to high-altitude hypoxia during an ascent of Everest

(2011) Denny Z. Levett et al.   FASEB JOURNAL

Altitudinal Variation at Duplicated β-Globin Genes in Deer Mice: Effects of Selection, Recombination, and Gene Conversion

(2011) Jay F. Storz et al.   GENETICS

Genomic insights into adaptation to high-altitude environments

(2011) Z A Cheviron et al.   HEREDITY

Coordination of cytochrome c oxidase gene expression in the remodelling of skeletal muscle

(2011) A. T. Duggan et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Elevated performance: the unique physiology of birds that fly at high altitudes

(2011) G. R. Scott   JOURNAL OF EXPERIMENTAL BIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Regulation of skeletal muscle mitochondrial function: genes to proteins

(2010) I. R. Lanza et al.   Acta Physiologica

Adaptive thermogenesis and thermal conductance in wild-type and UCP1-KO mice

(2010) Carola W. Meyer et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Thermogenesis in CD-1 mice after combined chronic hypoxia and cold acclimation

(2010) Jacqueline L. Beaudry et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Aldehyde dehydrogenase 2 (ALDH2) rescues myocardial ischaemia/reperfusion injury: role of autophagy paradox and toxic aldehyde

(2010) Heng Ma et al.   EUROPEAN HEART JOURNAL

Chronic Hyperperfusion and Angiogenesis Follow Subacute Hypoperfusion in the Thalamus of Rats with Focal Cerebral Ischemia

(2010) Nick MEA Hayward et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Genetic differences in hemoglobin function between highland and lowland deer mice

(2010) J. F. Storz et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Phenotypic plasticity and genetic adaptation to high-altitude hypoxia in vertebrates

(2010) J. F. Storz et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Avoidance of Skeletal Muscle Atrophy in Spontaneous and Facultative Hibernators

(2010) Clark J. Cotton et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Control of respiration in flight muscle from the high-altitude bar-headed goose and low-altitude birds

(2009) Graham R. Scott et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

In Vivo Alterations in Skeletal Muscle Form and Function after Disuse Atrophy

(2009) BRIAN C. CLARK   MEDICINE AND SCIENCE IN SPORTS AND EXERCISE

Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology

(2009) ANNE C. DALZIEL et al.   MOLECULAR ECOLOGY

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin

(2009) J. F. Storz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of muscle phenotype for extreme high altitude flight in the bar-headed goose

(2009) G. R. Scott et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modulated Modularity Clustering as an Exploratory Tool for Functional Genomic Inference

(2009) Eric A. Stone et al.   PLoS Genetics

Regulation of angiogenesis by homotypic and heterotypic notch signalling in endothelial cells and pericytes: from basic research to potential therapies

(2008) Richard C. A. Sainson et al.   ANGIOGENESIS

Reverse engineering the genotype–phenotype map with natural genetic variation

(2008) Matthew V. Rockman   NATURE

Contribution of Shivering and Nonshivering Thermogenesis to Thermogenic Capacity for the Deer Mouse (Peromyscus maniculatus)

(2008) Matthew J. Van Sant et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Gene expression profiling of skeletal muscle in exercise-trained and sedentary rats with inborn high and low VO2max

(2008) Anja Bye et al.   PHYSIOLOGICAL GENOMICS