FUNCTIONAL GENOMICS OF ADAPTATION TO HYPOXIC COLD-STRESS IN HIGH-ALTITUDE DEER MICE: TRANSCRIPTOMIC PLASTICITY AND THERMOGENIC PERFORMANCE

Epistasis Among Adaptive Mutations in Deer Mouse Hemoglobin

(2013) C. Natarajan et al.   SCIENCE

Increase in Carbohydrate Utilization in High-Altitude Andean Mice

(2012) Marie-Pierre Schippers et al.   CURRENT BIOLOGY

Contributions of phenotypic plasticity to differences in thermogenic performance between highland and lowland deer mice

(2012) Z. A. Cheviron et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Phenotypic plasticity in blood-oxygen transport in highland and lowland deer mice

(2012) D. M. Tufts et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

Temperature treatments during larval development reveal extensive heritable and plastic variation in gene expression and life history traits

(2012) JOUNI KVIST et al.   MOLECULAR ECOLOGY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice

(2012) Z. A. Cheviron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenotypic Plasticity of the Drosophila Transcriptome

(2012) Shanshan Zhou et al.   PLoS Genetics

Linking the Spatial Scale of Environmental Variation and the Evolution of Phenotypic Plasticity: Selection Favors Adaptive Plasticity in Fine-Grained Environments

(2011) Brooke S. Baythavong   AMERICAN NATURALIST

Genomic insights into adaptation to high-altitude environments

(2011) Z A Cheviron et al.   HEREDITY

Functional genomics of life history variation in a butterfly metapopulation

(2011) CHRISTOPHER W. WHEAT et al.   MOLECULAR ECOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Genomic mechanisms of evolved physiological plasticity in killifish distributed along an environmental salinity gradient

(2011) A. Whitehead et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI

(2010) Jay F. Storz et al.   EVOLUTION

Metabolic fuels: regulating fluxes to select mix

(2010) J.-M. Weber   JOURNAL OF EXPERIMENTAL BIOLOGY

Genetic differences in hemoglobin function between highland and lowland deer mice

(2010) J. F. Storz et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Phenotypic plasticity and genetic adaptation to high-altitude hypoxia in vertebrates

(2010) J. F. Storz et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Fuel selection in Wistar rats exposed to cold: shivering thermogenesis diverts fatty acids from re-esterification to oxidation

(2009) Eric Vaillancourt et al.   JOURNAL OF PHYSIOLOGY-LONDON

Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology

(2009) ANNE C. DALZIEL et al.   MOLECULAR ECOLOGY

Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep

(2009) Susan T Harbison et al.   NATURE GENETICS

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin

(2009) J. F. Storz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modulated Modularity Clustering as an Exploratory Tool for Functional Genomic Inference

(2009) Eric A. Stone et al.   PLoS Genetics

Plasticity of the Chemoreceptor Repertoire in Drosophila melanogaster

(2009) Shanshan Zhou et al.   PLoS Genetics

A transcriptional network associated with natural variation in Drosophila aggressive behavior

(2009) Alexis C Edwards et al.   GENOME BIOLOGY

Phenotypic Plasticity and Genotype by Environment Interaction for Olfactory Behavior in Drosophila melanogaster

(2008) Deepa Sambandan et al.   GENETICS

Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient

(2008) ZACHARY A. CHEVIRON et al.   MOLECULAR ECOLOGY

Reverse engineering the genotype–phenotype map with natural genetic variation

(2008) Matthew V. Rockman   NATURE

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Contribution of Shivering and Nonshivering Thermogenesis to Thermogenic Capacity for the Deer Mouse (Peromyscus maniculatus)

(2008) Matthew J. Van Sant et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY