Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
出版年份 2018 全文链接
标题
Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
作者
关键词
-
出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 115, Issue 21, Pages E4796-E4805
出版商
Proceedings of the National Academy of Sciences
发表日期
2018-05-11
DOI
10.1073/pnas.1722055115
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically-Encoded Multiplexed Reporter Assay in E. coli
- (2018) Guillaume Urtecho et al. BIOCHEMISTRY
- A Strategy to Combine Sample Multiplexing with Targeted Proteomics Assays for High-Throughput Protein Signature Characterization
- (2017) Brian K. Erickson et al. MOLECULAR CELL
- Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis
- (2017) Byoung-Mo Koo et al. Cell Systems
- CRISPR interference as a titratable, trans -acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp . strain PCC 7002
- (2016) Gina C. Gordon et al. METABOLIC ENGINEERING
- Mass-spectrometric exploration of proteome structure and function
- (2016) Ruedi Aebersold et al. NATURE
- Local and global regulation of transcription initiation in bacteria
- (2016) Douglas F. Browning et al. NATURE REVIEWS MICROBIOLOGY
- jPOSTrepo: an international standard data repository for proteomes
- (2016) Shujiro Okuda et al. NUCLEIC ACIDS RESEARCH
- Comprehensive mutagenesis of thefimSpromoter regulatory switch reveals novel regulation of type 1 pili in uropathogenicEscherichia coli
- (2016) Huibin Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Systematic mapping of functional enhancer–promoter connections with CRISPR interference
- (2016) Charles P. Fulco et al. SCIENCE
- A Quantitative Proteomics Tool To Identify DNA–Protein Interactions in Primary Cells or Blood
- (2015) Nina C. Hubner et al. JOURNAL OF PROTEOME RESEARCH
- Learning Quantitative Sequence–Function Relationships from Massively Parallel Experiments
- (2015) Gurinder S. Atwal et al. JOURNAL OF STATISTICAL PHYSICS
- Massively Systematic Transcript End Readout, “MASTER”: Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields
- (2015) Irina O. Vvedenskaya et al. MOLECULAR CELL
- The quantitative and condition-dependent Escherichia coli proteome
- (2015) Alexander Schmidt et al. NATURE BIOTECHNOLOGY
- RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
- (2015) Socorro Gama-Castro et al. NUCLEIC ACIDS RESEARCH
- Bacterial Sigma Factors: A Historical, Structural, and Genomic Perspective
- (2014) Andrey Feklístov et al. Annual Review of Microbiology
- Molecular Mechanisms Underlying Bacterial Persisters
- (2014) Etienne Maisonneuve et al. CELL
- Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
- (2014) Gene-Wei Li et al. CELL
- Widespread suppression of intragenic transcription initiation by H-NS
- (2014) S. S. Singh et al. GENES & DEVELOPMENT
- Defined Single-Gene and Multi-Gene Deletion Mutant Collections in Salmonella enterica sv Typhimurium
- (2014) Steffen Porwollik et al. PLoS One
- Bacterial Toxin RelE: A Highly Efficient Ribonuclease with Exquisite Substrate Specificity Using Atypical Catalytic Residues
- (2013) Meghan A. Griffin et al. BIOCHEMISTRY
- RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
- (2013) Michael J Cipriano et al. BMC GENOMICS
- Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
- (2013) P. Kheradpour et al. GENOME RESEARCH
- CRISPR interference (CRISPRi) for sequence-specific control of gene expression
- (2013) Matthew H Larson et al. Nature Protocols
- CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria
- (2013) Sefa Kılıç et al. NUCLEIC ACIDS RESEARCH
- Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins
- (2013) Hamid Mirzaei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Composability of regulatory sequences controlling transcription and translation inEscherichia coli
- (2013) Sriram Kosuri et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Why Transcription Factor Binding Sites Are Ten Nucleotides Long
- (2012) A. J. Stewart et al. GENETICS
- Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
- (2012) Alexandre Melnikov et al. NATURE BIOTECHNOLOGY
- Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters
- (2012) Eilon Sharon et al. NATURE BIOTECHNOLOGY
- Massively parallel functional dissection of mammalian enhancers in vivo
- (2012) Rupali P Patwardhan et al. NATURE BIOTECHNOLOGY
- Wisdom of crowds for robust gene network inference
- (2012) Daniel Marbach et al. NATURE METHODS
- EcoCyc: fusing model organism databases with systems biology
- (2012) Ingrid M. Keseler et al. NUCLEIC ACIDS RESEARCH
- DnaK Functions as a Central Hub in the E. coli Chaperone Network
- (2012) Giulia Calloni et al. Cell Reports
- The PurR regulon in Escherichia coli K-12 MG1655
- (2011) Byung-Kwan Cho et al. NUCLEIC ACIDS RESEARCH
- Quantitative dissection of the simple repression input-output function
- (2011) H. G. Garcia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effect of mass spectrometric parameters on peptide and protein identification rates for shotgun proteomic experiments on an LTQ-orbitrap mass analyzer
- (2011) Anastasia Kalli et al. PROTEOMICS
- Genome-wide essential gene identification in Streptococcus sanguinis
- (2011) Ping Xu et al. Scientific Reports
- Site-specific chromosomal integration of large synthetic constructs
- (2010) Thomas E. Kuhlman et al. NUCLEIC ACIDS RESEARCH
- Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
- (2010) J. B. Kinney et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RelB and RelE of Escherichia coli Form a Tight Complex That Represses Transcription via the Ribbon–Helix–Helix Motif in RelB
- (2009) Martin Overgaard et al. JOURNAL OF MOLECULAR BIOLOGY
- Protein Occupancy Landscape of a Bacterial Genome
- (2009) Tiffany Vora et al. MOLECULAR CELL
- A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
- (2009) Jürgen Cox et al. Nature Protocols
- A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements
- (2008) G. Mittler et al. GENOME RESEARCH
- Structural Mechanism of Transcriptional Autorepression of the Escherichia coli RelB/RelE Antitoxin/Toxin Module
- (2008) Guang-Yao Li et al. JOURNAL OF MOLECULAR BIOLOGY
- Analysis of mechanisms of activation and repression at bacterial promoters
- (2008) Stephen D. Minchin et al. METHODS
- Messenger RNA interferase RelE controlsrelBEtranscription by conditional cooperativity
- (2008) Martin Overgaard et al. MOLECULAR MICROBIOLOGY
- A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1
- (2008) Véronique de Berardinis et al. Molecular Systems Biology
- Energy-dependent fitness: A quantitative model for the evolution of yeast transcription factor binding sites
- (2008) V. Mustonen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now