标题
Mass-spectrometric exploration of proteome structure and function
作者
关键词
-
出版物
NATURE
Volume 537, Issue 7620, Pages 347-355
出版商
Springer Nature
发表日期
2016-09-14
DOI
10.1038/nature19949
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Epiproteomics: quantitative analysis of histone marks and codes by mass spectrometry
- (2016) Yupeng Zheng et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Positional proteomics reveals differences in N-terminal proteoform stability
- (2016) D. Gawron et al. Molecular Systems Biology
- Proteogenomics connects somatic mutations to signalling in breast cancer
- (2016) Philipp Mertins et al. NATURE
- The Perseus computational platform for comprehensive analysis of (prote)omics data
- (2016) Stefka Tyanova et al. NATURE METHODS
- Visualizing the molecular sociology at the HeLa cell nuclear periphery
- (2016) J. Mahamid et al. SCIENCE
- Systems proteomics of liver mitochondria function
- (2016) E. G. Williams et al. SCIENCE
- Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines
- (2016) Alexander Leitner et al. TRENDS IN BIOCHEMICAL SCIENCES
- A draft map of the mouse pluripotent stem cell spatial proteome
- (2016) Andy Christoforou et al. Nature Communications
- Analytic framework for peptidomics applied to large-scale neuropeptide identification
- (2016) Anna Secher et al. Nature Communications
- Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases
- (2016) Martin Steger et al. eLife
- Global, quantitative and dynamic mapping of protein subcellular localization
- (2016) Daniel N Itzhak et al. eLife
- Plasma Proteome Profiling to Assess Human Health and Disease
- (2016) Philipp E. Geyer et al. Cell Systems
- A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances
- (2015) Marco Y. Hein et al. CELL
- The BioPlex Network: A Systematic Exploration of the Human Interactome
- (2015) Edward L. Huttlin et al. CELL
- Quantitative Proteomic Analysis of Histone Modifications
- (2015) He Huang et al. CHEMICAL REVIEWS
- The Nuclear Proteome of a Vertebrate
- (2015) Martin Wühr et al. CURRENT BIOLOGY
- Proteome sequencing goes deep
- (2015) Alicia L Richards et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Interrogating the architecture of protein assemblies and protein interaction networks by cross-linking mass spectrometry
- (2015) Fan Liu et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Prediction of colorectal cancer diagnosis based on circulating plasma proteins
- (2015) S. Surinova et al. EMBO Molecular Medicine
- Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification
- (2015) Gilbert S. Omenn et al. JOURNAL OF PROTEOME RESEARCH
- Parallel Accumulation–Serial Fragmentation (PASEF): Multiplying Sequencing Speed and Sensitivity by Synchronized Scans in a Trapped Ion Mobility Device
- (2015) Florian Meier et al. JOURNAL OF PROTEOME RESEARCH
- Cross-linking immunoprecipitation-MS (xIP-MS): Topological Analysis of Chromatin-associated Protein Complexes Using Single Affinity Purification
- (2015) Matthew M. Makowski et al. MOLECULAR & CELLULAR PROTEOMICS
- Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry
- (2015) Etienne Caron et al. MOLECULAR & CELLULAR PROTEOMICS
- Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair
- (2015) H. B. Schiller et al. Molecular Systems Biology
- Quantitative variability of 342 plasma proteins in a human twin population
- (2015) Y. Liu et al. Molecular Systems Biology
- Panorama of ancient metazoan macromolecular complexes
- (2015) Cuihong Wan et al. NATURE
- A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides
- (2015) Joel M Chick et al. NATURE BIOTECHNOLOGY
- High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics
- (2015) Sean J Humphrey et al. NATURE BIOTECHNOLOGY
- xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry
- (2015) Thomas Walzthoeni et al. NATURE METHODS
- A strategy for dissecting the architectures of native macromolecular assemblies
- (2015) Yi Shi et al. NATURE METHODS
- Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry
- (2015) Fan Liu et al. NATURE METHODS
- DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics
- (2015) Chih-Chiang Tsou et al. NATURE METHODS
- Cell type– and brain region–resolved mouse brain proteome
- (2015) Kirti Sharma et al. NATURE NEUROSCIENCE
- Multidimensional proteomics for cell biology
- (2015) Mark Larance et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Structural characterization of the interaction of Ubp6 with the 26S proteasome
- (2015) Antje Aufderheide et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links
- (2015) M. Raschle et al. SCIENCE
- Tissue-based map of the human proteome
- (2015) M. Uhlen et al. SCIENCE
- Probing the Protein Interaction Network of Pseudomonas aeruginosa Cells by Chemical Cross-Linking Mass Spectrometry
- (2015) Arti T. Navare et al. STRUCTURE
- Mass Spectrometry-Based Detection and Assignment of Protein Posttranslational Modifications
- (2014) Sophia Doll et al. ACS Chemical Biology
- Multilayered Genetic and Omics Dissection of Mitochondrial Activity in a Mouse Reference Population
- (2014) Yibo Wu et al. CELL
- The Structural Basis of Substrate Recognition by the Eukaryotic Chaperonin TRiC/CCT
- (2014) Lukasz A. Joachimiak et al. CELL
- Cell-Type-Resolved Quantitative Proteomics of Murine Liver
- (2014) S. Babak Azimifar et al. Cell Metabolism
- Analyzing the First Drafts of the Human Proteome
- (2014) Iakes Ezkurdia et al. JOURNAL OF PROTEOME RESEARCH
- A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards
- (2014) Jacek R. Wiśniewski et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach
- (2014) Steven A. Carr et al. MOLECULAR & CELLULAR PROTEOMICS
- Accurate Protein Complex Retrieval by Affinity Enrichment Mass Spectrometry (AE-MS) Rather than Affinity Purification Mass Spectrometry (AP-MS)
- (2014) Eva C. Keilhauer et al. MOLECULAR & CELLULAR PROTEOMICS
- Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
- (2014) Jürgen Cox et al. MOLECULAR & CELLULAR PROTEOMICS
- A draft map of the human proteome
- (2014) Min-Sik Kim et al. NATURE
- Mass-spectrometry-based draft of the human proteome
- (2014) Mathias Wilhelm et al. NATURE
- OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
- (2014) Hannes L Röst et al. NATURE BIOTECHNOLOGY
- Global analysis of protein structural changes in complex proteomes
- (2014) Yuehan Feng et al. NATURE BIOTECHNOLOGY
- A mass spectrometry–based hybrid method for structural modeling of protein complexes
- (2014) Argyris Politis et al. NATURE METHODS
- Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins
- (2014) Katharina Kramer et al. NATURE METHODS
- Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
- (2014) Nils A Kulak et al. NATURE METHODS
- The growing landscape of lysine acetylation links metabolism and cell signalling
- (2014) Chunaram Choudhary et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Uncovering global SUMOylation signaling networks in a site-specific manner
- (2014) Ivo A Hendriks et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Tracking cancer drugs in living cells by thermal profiling of the proteome
- (2014) M. M. Savitski et al. SCIENCE
- Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling
- (2014) Kirti Sharma et al. Cell Reports
- A repository of assays to quantify 10,000 human proteins by SWATH-MS
- (2014) George Rosenberger et al. Scientific Data
- Orbitrap Mass Spectrometry
- (2013) Roman A. Zubarev et al. ANALYTICAL CHEMISTRY
- What is the total number of protein molecules per cell volume? A call to rethink some published values
- (2013) Ron Milo BIOESSAYS
- Multiplexed and data-independent tandem mass spectrometry for global proteome profiling
- (2013) John D. Chapman et al. MASS SPECTROMETRY REVIEWS
- The One Hour Yeast Proteome
- (2013) Alexander S. Hebert et al. MOLECULAR & CELLULAR PROTEOMICS
- Functional Proteomics Defines the Molecular Switch Underlying FGF Receptor Trafficking and Cellular Outputs
- (2013) Chiara Francavilla et al. MOLECULAR CELL
- Proteome-wide Identification of Poly(ADP-Ribosyl)ation Targets in Different Genotoxic Stress Responses
- (2013) Stephanie Jungmichel et al. MOLECULAR CELL
- The Coming Age of Complete, Accurate, and Ubiquitous Proteomes
- (2013) Matthias Mann et al. MOLECULAR CELL
- Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli
- (2013) Brian T. Weinert et al. MOLECULAR CELL
- A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
- (2013) Paola Picotti et al. NATURE
- Proteoform: a single term describing protein complexity
- (2013) Lloyd M Smith et al. NATURE METHODS
- Direct Proteomic Quantification of the Secretome of Activated Immune Cells
- (2013) F. Meissner et al. SCIENCE
- Integrative Structural Biology
- (2013) A. B. Ward et al. SCIENCE
- Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging
- (2013) H.-W. Rhee et al. SCIENCE
- Twenty Years of Gas Phase Structural Biology
- (2013) Julien Marcoux et al. STRUCTURE
- A Census of Human Soluble Protein Complexes
- (2012) Pierre C. Havugimana et al. CELL
- Systems Genetics of Metabolism: The Use of the BXD Murine Reference Panel for Multiscalar Integration of Traits
- (2012) Pénélope A. Andreux et al. CELL
- Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells
- (2012) Samuel Marguerat et al. CELL
- A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells
- (2012) Kyle J. Roux et al. JOURNAL OF CELL BIOLOGY
- Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics
- (2012) Amelia C. Peterson et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
- (2012) Ludovic C. Gillet et al. MOLECULAR & CELLULAR PROTEOMICS
- Direct identification of ligand-receptor interactions on living cells and tissues
- (2012) Andreas P Frei et al. NATURE BIOTECHNOLOGY
- A high-throughput approach for measuring temporal changes in the interactome
- (2012) Anders R Kristensen et al. NATURE METHODS
- Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions
- (2012) Paola Picotti et al. NATURE METHODS
- Affinity-purification coupled to mass spectrometry: Basic principles and strategies
- (2012) Wade H. Dunham et al. PROTEOMICS
- Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry
- (2012) F. Herzog et al. SCIENCE
- Structural Mass Spectrometry of Proteins Using Hydroxyl Radical Based Protein Footprinting
- (2011) Liwen Wang et al. ANALYTICAL CHEMISTRY
- Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry
- (2011) Christina Ludwig et al. MOLECULAR & CELLULAR PROTEOMICS
- Deep proteome and transcriptome mapping of a human cancer cell line
- (2011) N. Nagaraj et al. Molecular Systems Biology
- The quantitative proteome of a human cell line
- (2011) M. Beck et al. Molecular Systems Biology
- Mapping intact protein isoforms in discovery mode using top-down proteomics
- (2011) John C. Tran et al. NATURE
- Too many roads not taken
- (2011) Aled M. Edwards et al. NATURE
- Global quantification of mammalian gene expression control
- (2011) Björn Schwanhäusser et al. NATURE
- MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
- (2011) Lily Ting et al. NATURE METHODS
- Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates
- (2011) Oded Kleifeld et al. Nature Protocols
- The mTOR-Regulated Phosphoproteome Reveals a Mechanism of mTORC1-Mediated Inhibition of Growth Factor Signaling
- (2011) P. P. Hsu et al. SCIENCE
- Mass Spectrometry of Intact V-Type ATPases Reveals Bound Lipids and the Effects of Nucleotide Binding
- (2011) M. Zhou et al. SCIENCE
- Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
- (2010) Brendan MacLean et al. BIOINFORMATICS
- A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression
- (2010) Edward L. Huttlin et al. CELL
- Defining the transcriptome and proteome in three functionally different human cell lines
- (2010) Emma Lundberg et al. Molecular Systems Biology
- SAINT: probabilistic scoring of affinity purification–mass spectrometry data
- (2010) Hyungwon Choi et al. NATURE METHODS
- Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
- (2010) J. V. Olsen et al. Science Signaling
- Analysis of Protein Conformation and Dynamics by Hydrogen/Deuterium Exchange MS
- (2009) John R. Engen ANALYTICAL CHEMISTRY
- Mass Cytometry: Technique for Real Time Single Cell Multitarget Immunoassay Based on Inductively Coupled Plasma Time-of-Flight Mass Spectrometry
- (2009) Dmitry R. Bandura et al. ANALYTICAL CHEMISTRY
- iTRAQ Underestimation in Simple and Complex Mixtures: “The Good, the Bad and the Ugly”
- (2009) Saw Yen Ow et al. JOURNAL OF PROTEOME RESEARCH
- Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans
- (2009) Johan Malmström et al. NATURE
- Target profiling of small molecules by chemical proteomics
- (2009) Uwe Rix et al. Nature Chemical Biology
- Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
- (2008) Lyris M. F. de Godoy et al. NATURE
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now