RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

PePPER: a webserver for prediction of prokaryote promoter elements and regulons

(2012) Anne de Jong et al.   BMC GENOMICS

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

(2011) Dmitry A Rodionov et al.   BMC GENOMICS

Comparative Genomics of the Dormancy Regulons in Mycobacteria

(2011) A. Gerasimova et al.   JOURNAL OF BACTERIOLOGY

Comparative Genomic Analysis of the Hexuronate Metabolism Genes and Their Regulation in Gammaproteobacteria

(2011) I. A. Suvorova et al.   JOURNAL OF BACTERIOLOGY

An Ergatis-based prokaryotic genome annotation web server

(2010) Chris Hemmerich et al.   BIOINFORMATICS

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Discovering cis-Regulatory RNAs in Shewanella Genomes by Support Vector Machines

(2009) Xing Xu et al.   PLoS Computational Biology

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation

(2008) E. Wingender   BRIEFINGS IN BIOINFORMATICS

The cis-regulatory map of Shewanella genomes

(2008) J. Liu et al.   NUCLEIC ACIDS RESEARCH

Comparative genomic analysis of T-box regulatory systems in bacteria

(2008) A. G. Vitreschak et al.   RNA