CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria

LASAGNA: A novel algorithm for transcription factor binding site alignment

(2013) Chih Lee et al.   BMC BIOINFORMATICS

RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

(2013) Michael J Cipriano et al.   BMC GENOMICS

MuMoD: a Bayesian approach to detect multiple modes of protein–DNA binding from genome-wide ChIP data

(2012) Leelavati Narlikar   NUCLEIC ACIDS RESEARCH

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

(2012) Heladia Salgado et al.   NUCLEIC ACIDS RESEARCH

Improved predictions of transcription factor binding sites using physicochemical features of DNA

(2012) Mark Maienschein-Cline et al.   NUCLEIC ACIDS RESEARCH

CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands

(2011) J. Pauling et al.   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Mechanisms and Evolution of Control Logic in Prokaryotic Transcriptional Regulation

(2009) S. A. F. T. van Hijum et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Different gene regulation strategies revealed by analysis of binding motifs

(2009) Zeba Wunderlich et al.   TRENDS IN GENETICS

Databases, data tombs and dust in the wind

(2008) J. D. Wren et al.   BIOINFORMATICS

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes

(2008) A. Grote et al.   NUCLEIC ACIDS RESEARCH