The pathobiome concept applied to postharvest pathology and its implication on biocontrol strategies

Complex yeast–bacteria interactions affect the yield of industrial ethanol fermentation

(2021) Felipe Senne de Oliveira Lino et al.   Nature Communications

Dynamics of the Apple Fruit Microbiome after Harvest and Implications for Fruit Quality

(2021) Yvonne Bösch et al.   Microorganisms

Global analysis of the apple fruit microbiome: are all apples the same?

(2021) Ahmed Abdelfattah et al.   ENVIRONMENTAL MICROBIOLOGY

Compositional shifts in the strawberry fruit microbiome in response to near-harvest application of Metschnikowia fructicola, a yeast biocontrol agent

(2021) V. Yeka Zhimo et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Impact of packhouse treatments on the peel microbiome of mandarin fruit (cv. Orr)

(2021) Ajay Kumar et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

NetCom: A Network-Based Tool for Predicting Metabolic Activities of Microbial Communities Based on Interpretation of Metagenomics Data

(2021) Ofir Tal et al.   Microorganisms

Evidence for host–microbiome co‐evolution in apple

(2021) Ahmed Abdelfattah et al.   NEW PHYTOLOGIST

Contribution of fruit microbiome to raspberry volatile organic compounds emission

(2021) Daniela Sangiorgio et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Widespread bacterial diversity within the bacteriome of fungi

(2021) Aaron J. Robinson et al.   Communications Biology

Latent postharvest pathogens of pome fruit and their management: from single measures to a systems intervention approach

(2020) Marcel Wenneker et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Woody Plant Declines. What’s Wrong with the Microbiome?

(2020) Pauline Bettenfeld et al.   TRENDS IN PLANT SCIENCE

Characterizing the Fungal Microbiome in Date (Phoenix dactylifera) Fruit Pulp and Peel from Early Development to Harvest

(2020) Edoardo Piombo et al.   Microorganisms

NetMet: A Network-Based Tool for Predicting Metabolic Capacities of Microbial Species and their Interactions

(2020) Ofir Tal et al.   Microorganisms

Effect of Washing, Waxing and Low-Temperature Storage on the Postharvest Microbiome of Apple

(2020) Ahmed Abdelfattah et al.   Microorganisms

Let’s Get Physical: Bacterial-Fungal Interactions and Their Consequences in Agriculture and Health

(2020) Breanne N. Steffan et al.   Journal of Fungi

Responses of phyllosphere microbiota and plant health to application of two different biocontrol agents

(2019) Chong Qin et al.   AMB Express

Microbiota-mediated disease resistance in plants

(2019) Nathan Vannier et al.   PLoS Pathogens

The Pathobiome in Animal and Plant Diseases

(2019) David Bass et al.   TRENDS IN ECOLOGY & EVOLUTION

The postharvest microbiome: The other half of sustainability

(2019) Michael Wisniewski et al.   BIOLOGICAL CONTROL

Pichia kudriavzevii retards fungal decay by influencing the fungal community succession during cherry tomato fruit storage

(2019) Xia Liu et al.   FOOD MICROBIOLOGY

Modeling trophic dependencies and exchanges among insects’ bacterial symbionts in a host-simulated environment

(2018) Itai Opatovsky et al.   BMC GENOMICS

The fruit microbiome: A new frontier for postharvest biocontrol and postharvest biology

(2018) Samir Droby et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Metagenomic and Metatranscriptomic Analyses of Diverse Watermelon Cultivars Reveal the Role of Fruit Associated Microbiome in Carbohydrate Metabolism and Ripening of Mature Fruits

(2018) Thangasamy Saminathan et al.   Frontiers in Plant Science

Apple endophytic microbiota of different rootstock/scion combinations suggests a genotype-specific influence

(2018) Jia Liu et al.   Microbiome

Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

(2018) Martin Broberg et al.   Microbiome

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

Microbial Consortium Design Benefits from Metabolic Modeling

(2018) Karoline Faust   TRENDS IN BIOTECHNOLOGY

The fungal holobiont: Evidence from early diverging fungi

(2017) Laila P. Partida-Martínez   ENVIRONMENTAL MICROBIOLOGY

Prospects for Biological Soilborne Disease Control: Application of Indigenous Versus Synthetic Microbiomes

(2017) Mark Mazzola et al.   PHYTOPATHOLOGY

Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation

(2017) Shany Ofaim et al.   Frontiers in Microbiology

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Synthetic Ecology of Microbes: Mathematical Models and Applications

(2016) Ali R. Zomorrodi et al.   JOURNAL OF MOLECULAR BIOLOGY

The science, development, and commercialization of postharvest biocontrol products

(2016) Samir Droby et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Development of biocontrol products for postharvest diseases of fruit: The importance of elucidating the mechanisms of action of yeast antagonists

(2016) Davide Spadaro et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Spatial and compositional variation in the fungal communities of organic and conventionally grown apple fruit at the consumer point-of-purchase

(2016) Ahmed Abdelfattah et al.   Horticulture Research

Strategies of Genomic Integration Within Insect-Bacterial Mutualisms

(2016) Jennifer J. Wernegreen   BIOLOGICAL BULLETIN

Metabolic interactions in microbial communities: untangling the Gordian knot

(2015) Olga Ponomarova et al.   CURRENT OPINION IN MICROBIOLOGY

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Resilience of the Natural Phyllosphere Microbiota of the Grapevine to Chemical and Biological Pesticides

(2014) Michele Perazzolli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial multispecies studies and microbiome analysis of a plant disease

(2014) Daniel Passos da Silva et al.   MICROBIOLOGY-SGM

Quiescent and Necrotrophic Lifestyle Choice During Postharvest Disease Development

(2013) Dov Prusky et al.   Annual Review of Phytopathology

The impact of microbial symbionts on host plant utilization by herbivorous insects

(2013) Allison K. Hansen et al.   MOLECULAR ECOLOGY

Co-infection by Botryosphaeriaceae andIlyonectriaspp. fungi during propagation causes decline of young grafted grapevines

(2013) M. A. Whitelaw-Weckert et al.   PLANT PATHOLOGY

Introduction of Aureobasidium pullulans to the Phyllosphere of Organically Grown Strawberries with Focus on Its Establishment and Interactions with the Resident Microbiome

(2013) Justine Sylla et al.   Agronomy-Basel

Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

Interaction of Candida albicans Cell Wall Als3 Protein with Streptococcus gordonii SspB Adhesin Promotes Development of Mixed-Species Communities

(2010) R. J. Silverman et al.   INFECTION AND IMMUNITY

Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions

(2009) Paola Bonfante et al.   Annual Review of Microbiology

Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans

(2009) V. Schroeckh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA