Fish Pathology Research and Diagnosis in Aquaculture of Farmed Fish; a Proteomics Perspective

Click Chemistry in Proteomic Investigations

(2020) Christopher G. Parker et al.   CELL

Metagenomic and Metaproteomic Insights into Photoautotrophic and Heterotrophic Interactions in a Synechococcus Culture

(2020) Qiang Zheng et al.   mBio

Protein changes as robust signatures of fish chronic stress: a proteomics approach to fish welfare research

(2020) Cláudia Raposo de Magalhães et al.   BMC GENOMICS

Viral nervous necrosis outbreaks caused by the RGNNV/SJNNV reassortant betanodavirus in gilthead sea bream (Sparus aurata) and European sea bass (Dicentrarchus labrax)

(2020) E. Volpe et al.   AQUACULTURE

Protein-protein interaction network: an emerging tool for understanding fish disease in aquaculture

(2020) Khor Waiho et al.   Reviews in Aquaculture

Proteomic Strategies to Evaluate the Impact of Farming Conditions on Food Quality and Safety in Aquaculture Products

(2020) Mónica Carrera et al.   Foods

First isolation and identification of red-grouper nervous necrosis virus (RGNNV) from adult hybrid Hulong grouper (Epinephelus fuscoguttatus × Epinephelus lanceolatus) in China

(2020) Yinghui Qin et al.   AQUACULTURE

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing

(2019) Mak A. Saito et al.   JOURNAL OF PROTEOME RESEARCH

Identification and typing of Vagococcus salmoninarum using genomic and proteomic techniques

(2019) Yolanda Torres-Corral et al.   JOURNAL OF FISH DISEASES

Comparative bioinformatic and proteomic approaches to evaluate the outer membrane proteome of the fish pathogen Yersinia ruckeri

(2019) Michael J. Ormsby et al.   Journal of Proteomics

Catching the complexity of salmon-louse interactions

(2019) Cristian Gallardo-Escárate et al.   FISH & SHELLFISH IMMUNOLOGY

Proteome profiling of L3 and L4 Anisakis simplex development stages by TMT-based quantitative proteomics

(2019) Robert Stryiński et al.   Journal of Proteomics

Integrated Transcriptomic and Proteomic Analysis of Red Blood Cells from Rainbow Trout Challenged with VHSV Point Towards Novel Immunomodulant Targets

(2019) Nombela et al.   Vaccines

Report and genetic identification of Amyloodinium ocellatum in a sea bass (Dicentrarchus labrax) broodstock in Portugal

(2019) Cátia L. Marques et al.   Aquaculture Reports

Proteomics for understanding pathogenesis, immune modulation and host pathogen interactions in aquaculture

(2019) Fatma Ahmed et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Deciphering the Functioning of Microbial Communities: Shedding Light on the Critical Steps in Metaproteomics

(2019) Augustin Géron et al.   Frontiers in Microbiology

Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales

(2019) Kathrin Näpflin et al.   PeerJ

From aquaculture production to consumption: Freshness, safety, traceability and authentication, the four pillars of quality

(2019) Jorge Freitas et al.   AQUACULTURE

A new age in AquaMedicine: unconventional approach in studying aquatic diseases

(2018) Michael Gotesman et al.   BMC Veterinary Research

Proteomic analysis of ametryn toxicity in zebrafish embryos

(2018) Heng-Dao Lin et al.   ENVIRONMENTAL TOXICOLOGY

Applications of transcriptomics and proteomics in understanding fish immunity

(2018) Hua Ye et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive Review

(2018) Arun Sudhagar et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Characterization of the outer membrane proteome of Francisella noatunensis subsp. orientalis

(2018) K. Shahin et al.   JOURNAL OF APPLIED MICROBIOLOGY

Quantitative proteomic analysis reveals that chemotaxis is involved in chlortetracycline resistance of Aeromonas hydrophila

(2018) Wanxin Li et al.   Journal of Proteomics

Use of ribosomal proteins as biomarkers for identification of Flavobacterium psychrophilum by MALDI-TOF mass spectrometry

(2018) Clara Fernández-Álvarez et al.   Journal of Proteomics

Zebrafish Infection: From Pathogenesis to Cell Biology

(2018) Vincenzo Torraca et al.   TRENDS IN CELL BIOLOGY

Integration of Transcriptomic and Proteomic Approaches Reveals the Temperature-Dependent Virulence of Pseudomonas plecoglossicida

(2018) Lixing Huang et al.   Frontiers in Cellular and Infection Microbiology

Quantitative Proteomic Analysis of Four Developmental Stages of Saprolegnia parasitica

(2018) Vaibhav Srivastava et al.   Frontiers in Microbiology

Combined transcriptomic/proteomic analysis of crucian carp Carassius auratus gibelio in cyprinid herpesvirus 2 infection

(2018) Min Liu et al.   FISH & SHELLFISH IMMUNOLOGY

Proteome analysis reveals a role of rainbow trout lymphoid organs during Yersinia ruckeri infection process

(2018) Gokhlesh Kumar et al.   Scientific Reports

Proteomic and molecular fingerprinting for identification and tracking of fish pathogenic Streptococcus

(2018) Torres-Corral Yolanda et al.   AQUACULTURE

High-throughput proteomic profiling of the fish liver following bacterial infection

(2018) Dwight R Causey et al.   BMC GENOMICS

Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

(2018) Amy R Ellison et al.   BMC GENOMICS

Quantitative proteomic profiling of immune responses to Ichthyophthirius multifiliis in common carp skin mucus

(2018) Mona Saleh et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature

(2018) Guilherme C. Tavares et al.   Frontiers in Microbiology

Plasma proteomic analysis of zebrafish following spring viremia of carp virus infection

(2018) Regla Medina-Gali et al.   FISH & SHELLFISH IMMUNOLOGY

Label-free proteomic analysis of intestinal mucosa proteins in common carp ( Cyprinus carpio ) infected with Aeromonas hydrophila

(2017) Guilan Di et al.   FISH & SHELLFISH IMMUNOLOGY

Proteomic characterization of the interactions between fish serum proteins and waterborne bacteria reveals the suppression of anti-oxidative defense as a serum-mediated antimicrobial mechanism

(2017) Miao Dong et al.   FISH & SHELLFISH IMMUNOLOGY

Terminal carbohydrates abundance, immune related enzymes, bactericidal activity and physico-chemical parameters of the Senegalese sole ( Solea senegalensis , Kaup) skin mucus

(2017) Francisco A. Guardiola et al.   FISH & SHELLFISH IMMUNOLOGY

Current knowledge of metabolomic approach in infectious fish disease studies

(2017) C-F Low et al.   JOURNAL OF FISH DISEASES

Physiological responses of reared sea bream (Sparus aurata Linnaeus, 1758) to an Amyloodinium ocellatum outbreak

(2017) M Moreira et al.   JOURNAL OF FISH DISEASES

Proteomic and Functional Analyses of the Virion Transmembrane Proteome of Cyprinid Herpesvirus 3

(2017) Catherine Vancsok et al.   JOURNAL OF VIROLOGY

Differentiation of Flavobacterium psychrophilum from Flavobacterium psychrophilum -like species by MALDI-TOF mass spectrometry

(2017) Marta Pérez-Sancho et al.   RESEARCH IN VETERINARY SCIENCE

A proteomic analysis of the iron response of Photobacterium damselae subsp. damselae reveals metabolic adaptations to iron levels changes and novel potential virulence factors

(2017) Beatriz Puentes et al.   VETERINARY MICROBIOLOGY

Infectious hematopoietic necrosis virus (IHNV) outbreak in farmed rainbow trout in Iran: Viral isolation, pathological findings, molecular confirmation, and genetic analysis

(2017) Sohrab Ahmadivand et al.   VIRUS RESEARCH

Interactome of E. piscicida and grouper liver proteins reveals strategies of bacterial infection and host immune response

(2017) Hui Li et al.   Scientific Reports

In vivo Host-Pathogen Interaction as Revealed by Global Proteomic Profiling of Zebrafish Larvae

(2017) Francisco Díaz-Pascual et al.   Frontiers in Cellular and Infection Microbiology

Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses

(2017) Benoît Sotton et al.   Scientific Reports

Differentiation of Photobacterium damselae subspecies using Matrix-Assisted Laser-Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) in fish isolates

(2016) Marta Pérez-Sancho et al.   AQUACULTURE

A review on host–pathogen interactions: classification and prediction

(2016) R. Sen et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Comparative proteome analysis reveals proteins involved in salt adaptation inPhotobacterium damselaesubsp.piscicida

(2016) Min-Yuan Chuang et al.   JOURNAL OF BASIC MICROBIOLOGY

Differential proteome profile of skin mucus of gilthead seabream (Sparus aurata) after probiotic intake and/or overcrowding stress

(2016) Héctor Cordero et al.   Journal of Proteomics

The microbiome and innate immunity

(2016) Christoph A. Thaiss et al.   NATURE

Mass-spectrometric exploration of proteome structure and function

(2016) Ruedi Aebersold et al.   NATURE

Proteomic analysis of differentially expressed proteins in the two developmental stages of Ichthyophthirius multifiliis

(2016) Jia-Yun Yao et al.   PARASITOLOGY RESEARCH

Complementary approaches to diagnosing marine diseases: a union of the modern and the classic

(2016) Colleen A. Burge et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effect of predictability on the stress response to chasing in Atlantic salmon (Salmo salar L.) parr

(2016) Angelico Madaro et al.   PHYSIOLOGY & BEHAVIOR

Adverse Husbandry of Maraena Whitefish Directs the Immune System to Increase Mobilization of Myeloid Cells and Proinflammatory Responses

(2016) Tomáš Korytář et al.   Frontiers in Immunology

Defining, assessing and promoting the welfare of farmed fish

(2016) F.A. HUNTINGFORD et al.   REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES

Proteomic analysis of cellular protein expression profiles in response to grass carp reovirus infection

(2015) Dan Xu et al.   FISH & SHELLFISH IMMUNOLOGY

Comparison of proteome typing and serotyping of Streptococcus parauberis isolates from olive flounder ( Paralichthys olivaceus )

(2015) Si Won Kim et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Comparative proteomic study of Edwardsiella tarda strains with different degrees of virulence

(2015) Noemí Buján et al.   Journal of Proteomics

Transcriptomic and proteomic analyses of splenic immune mechanisms of rainbow trout (Oncorhynchus mykiss) infected by Aeromonas salmonicida subsp. salmonicida

(2015) Meng Long et al.   Journal of Proteomics

Coping styles in farmed fish: consequences for aquaculture

(2015) Maria Filipa Castanheira et al.   Reviews in Aquaculture

MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis

(2015) Neelja Singhal et al.   Frontiers in Microbiology

Fish intelligence, sentience and ethics

(2014) Culum Brown   ANIMAL COGNITION

Influence of domestication process on immune response to repeated emersion stressors in Eurasian perch (Perca fluviatilis, L.)

(2014) J. Douxfils et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Differentially expressed proteins in gill and skin mucus of Atlantic salmon (Salmo salar) affected by amoebic gill disease

(2014) Victoria A. Valdenegro-Vega et al.   FISH & SHELLFISH IMMUNOLOGY

Economic costs of protistan and metazoan parasites to global mariculture

(2014) A. P. SHINN et al.   PARASITOLOGY

Streptococcus iniae SF1: Complete Genome Sequence, Proteomic Profile, and Immunoprotective Antigens

(2014) Bao-cun Zhang et al.   PLoS One

Expert consultation on risk factors for introduction of infectious pathogens into fish farms

(2014) Birgit C. Oidtmann et al.   PREVENTIVE VETERINARY MEDICINE

Protein expression and transcription profiles of three strains of Aeromonas salmonicida ssp. salmonicida under normal and iron-limited culture conditions

(2014) Simon Menanteau-Ledouble et al.   Proteome Science

Differentially expressed proteins in the skin mucus of Atlantic cod (Gadus morhua) upon natural infection with Vibrio anguillarum

(2013) Binoy Rajan et al.   BMC Veterinary Research

Responses of Mytilus galloprovincialis to bacterial challenges by metabolomics and proteomics

(2013) Chenglong Ji et al.   FISH & SHELLFISH IMMUNOLOGY

The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens

(2013) Daniela Gomez et al.   FISH & SHELLFISH IMMUNOLOGY

iTRAQ analysis of gill proteins from the zebrafish (Danio rerio) infected with Aeromonas hydrophila

(2013) Aijun Lü et al.   FISH & SHELLFISH IMMUNOLOGY

Traceability in a food supply chain: Safety and quality perspectives

(2013) Myo Min Aung et al.   FOOD CONTROL

Outer membrane protein assembly factor YaeT (omp85) and GroEL proteins ofEdwardsiella tardaare immunogenic antigens forLabeo rohita(Hamilton)

(2013) G Kumar et al.   JOURNAL OF FISH DISEASES

Proteomic analysis of epidermal mucus from sea lice-infected Atlantic salmon,Salmo salarL.

(2013) F Provan et al.   JOURNAL OF FISH DISEASES

Megalocytivirus-induced proteins of turbot (Scophthalmus maximus): Identification and antiviral potential

(2013) Jian Zhang et al.   Journal of Proteomics

The serum proteome of Atlantic salmon, Salmo salar, during pancreas disease (PD) following infection with salmonid alphavirus subtype 3 (SAV3)

(2013) M. Braceland et al.   Journal of Proteomics

Proteomics and its applications to aquaculture in China: Infection, immunity, and interaction of aquaculture hosts with pathogens

(2012) Xuan-Xian Peng   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Reality as the leading cause of stress: rethinking the impact of chronic stress in nature

(2012) Rudy Boonstra   FUNCTIONAL ECOLOGY

PROTEOMICS in aquaculture: Applications and trends

(2012) Pedro M. Rodrigues et al.   Journal of Proteomics

Kidney proteome responses in the teleost fish Paralichthys olivaceus indicate a putative immune response against Streptococcus parauberis

(2012) In-Seok Cha et al.   Journal of Proteomics

Bacterial Classification of Fish-Pathogenic Mycobacterium Species by Multigene Phylogenetic Analyses and MALDI Biotyper Identification System

(2012) Satoru Kurokawa et al.   MARINE BIOTECHNOLOGY

Divergent time course of cortisol response to stress in fish of different ages

(2012) Gessi Koakoski et al.   PHYSIOLOGY & BEHAVIOR

Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology

(2011) Jürgen Cox et al.   Annual Review of Biochemistry

Physiological responses of Senegalese sole (Solea senegalensis Kaup, 1858) after stress challenge: Effects on non-specific immune parameters, plasma free amino acids and energy metabolism

(2011) Benjamín Costas et al.   AQUACULTURE

Stress and immune modulation in fish

(2011) Lluis Tort   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Effects of waterborne Cu exposure in gilthead sea bream (Sparus aurata): A proteomic approach

(2011) Gloria Isani et al.   FISH & SHELLFISH IMMUNOLOGY

Physiological and proteomic evidences that domestication process differentially modulates the immune status of juvenile Eurasian perch (Perca fluviatilis) under chronic confinement stress

(2011) J. Douxfils et al.   FISH & SHELLFISH IMMUNOLOGY

Health of farmed fish: its relation to fish welfare and its utility as welfare indicator

(2011) Helmut Segner et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Behavioural indicators of welfare in farmed fish

(2011) Catarina I. M. Martins et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Systemic Flavobacterium psychrophilum infection in rainbow trout, Oncorhynchus mykiss (Walbaum), farmed in fresh and brackish water in Norway

(2011) H Nilsen et al.   JOURNAL OF FISH DISEASES

Proteomic analysis of Singapore grouper iridovirus envelope proteins and characterization of a novel envelope protein VP088

(2011) Sheng Zhou et al.   PROTEOMICS

Changes in muscle and blood plasma proteomes of Atlantic salmon (Salmo salar) induced by crowding

(2010) Eva Veiseth-Kent et al.   AQUACULTURE

Zebrafish fin immune responses during high mortality infections with viral haemorrhagic septicemia rhabdovirus. A proteomic and transcriptomic approach

(2010) Paloma Encinas et al.   BMC GENOMICS

Proteomic analysis of zebrafish (Danio rerio) infected with infectious spleen and kidney necrosis virus

(2010) Xiao-Peng Xiong et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Proteomics in the study of the molecular taxonomy and epidemiology of bacterial pathogens

(2010) Phillip Cash   ELECTROPHORESIS

Changes in complement responses in Gilthead seabream (Sparus aurata) and European seabass (Dicentrarchus labrax) under crowding stress, plus viral and bacterial challenges

(2010) I. Mauri et al.   FISH & SHELLFISH IMMUNOLOGY

The endocrinology of stress in fish: An environmental perspective

(2010) N.W. Pankhurst   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Changes in Atlantic salmon Salmo salar mucus components following short- and long-term handling stress

(2010) R. H. Easy et al.   JOURNAL OF FISH BIOLOGY

Species Differentiation of Seafood Spoilage and Pathogenic Gram-Negative Bacteria by MALDI-TOF Mass Fingerprinting

(2010) Karola Böhme et al.   JOURNAL OF PROTEOME RESEARCH

The role of the glucocorticoid receptor in inflammation and immunity

(2010) Ulrike Baschant et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

Proteomic analysis of the fish pathogen Flavobacterium columnare

(2010) Pradeep R Dumpala et al.   Proteome Science

Short-term crowding stress in Atlantic cod, Gadus morhua L. modulates the humoral immune response

(2009) Christopher Marlowe A. Caipang et al.   AQUACULTURE

Metabolic molecular indicators of chronic stress in gilthead seabream (Sparus aurata) using comparative proteomics

(2009) Ricardo N. Alves et al.   AQUACULTURE

Proteomic analysis of Flavobacterium psychrophilum cultured in vivo and in iron-limited media

(2009) BR LaFrentz et al.   DISEASES OF AQUATIC ORGANISMS

The ecology of climate change and infectious diseases

(2009) Kevin D. Lafferty   ECOLOGY

Repeatable immersion infection with Photobacterium damselae subsp. piscicida reproducing clinical signs and moderate mortality

(2009) Ichiro Nagano et al.   FISHERIES SCIENCE

What is in a name? Integrating homeostasis, allostasis and stress

(2009) Bruce S. McEwen et al.   HORMONES AND BEHAVIOR

Proteomic identification of membrane proteins regulating antimicrobial peptide resistance inVibrio parahaemolyticus

(2009) C.-J. Shen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Fish proteome analysis: Model organisms and non-sequenced species

(2009) Ignasi Forné et al.   PROTEOMICS

Changes in selected stress and immune-related genes in Atlantic cod,Gadus morhua, following overcrowding

(2008) Christopher Marlowe A Caipang et al.   AQUACULTURE RESEARCH

Acute osmotic stress affects Tilapia (Oreochromis mossambicus) innate immune responses

(2008) Ing-Fong Jiang et al.   FISH & SHELLFISH IMMUNOLOGY

Proteomic analysis of head kidney tissue from high and low susceptibility families of channel catfish following challenge with Edwardsiella ictaluri

(2008) Natha J. Booth et al.   FISH & SHELLFISH IMMUNOLOGY

Cortisol response and immune-related effects of Atlantic salmon (Salmo salar Linnaeus) subjected to short- and long-term stress

(2007) Mark D. Fast et al.   FISH & SHELLFISH IMMUNOLOGY

Quality and safety standards in the food industry, developments and challenges

(2007) Jacques Trienekens et al.   INTERNATIONAL JOURNAL OF PRODUCTION ECONOMICS