Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales
出版年份 2019 全文链接
标题
Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales
作者
关键词
-
出版物
PeerJ
Volume 7, Issue -, Pages e8013
出版商
PeerJ
发表日期
2019-11-05
DOI
10.7717/peerj.8013
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- OMeta: an ontology-based, data-driven metadata tracking system
- (2019) Indresh Singh et al. BMC BIOINFORMATICS
- Exploring the unmapped DNA and RNA reads in a songbird genome
- (2019) Veronika N. Laine et al. BMC GENOMICS
- Genomic Advances in Avian Malaria Research
- (2019) Elin Videvall TRENDS IN PARASITOLOGY
- Immune genes are hotspots of shared positive selection across birds and mammals
- (2019) Allison J Shultz et al. eLife
- Exploring the Arctic Charr Intestinal Glycome: Evidence of Increased N-Glycolylneuraminic Acid Levels and Changed Host–Pathogen Interactions in Response to Inflammation
- (2019) Vignesh Venkatakrishnan et al. JOURNAL OF PROTEOME RESEARCH
- Integrative Genomics Reveals the Genetics and Evolution of the Honey Bee’s Social Immune System
- (2019) Brock A Harpur et al. Genome Biology and Evolution
- Adaptation to Host-Specific Bacterial Pathogens Drives Rapid Evolution of a Human Innate Immune Receptor
- (2019) Jonas Adrian et al. CURRENT BIOLOGY
- Marine DNA Viral Macro- and Microdiversity from Pole to Pole
- (2019) Ann C. Gregory et al. CELL
- Ancient pathogen genomics as an emerging tool for infectious disease research
- (2019) Maria A. Spyrou et al. NATURE REVIEWS GENETICS
- High-Throughput Sequencing for Understanding the Ecology of Emerging Infectious Diseases at the Wildlife-Human Interface
- (2019) Georgia C. Titcomb et al. Frontiers in Ecology and Evolution
- Avian MHC Evolution in the Era of Genomics: Phase 1.0
- (2019) Emily A. O’Connor et al. Cells
- Non-mammalian Toll-like receptor 18 (Tlr18) recognizes bacterial pathogens in common carp ( Cyprinus carpio L.): Indications for a role of participation in the NF-κB signaling pathway
- (2018) Shijuan Shan et al. FISH & SHELLFISH IMMUNOLOGY
- Helicobacter suis binding to carbohydrates on human and porcine gastric mucins and glycolipids occurs via two modes
- (2018) Médea Padra et al. Virulence
- Detection of Emerging Zoonotic Pathogens: An Integrated One Health Approach
- (2018) Brian H. Bird et al. Annual Review of Animal Biosciences
- Two host gut-derived lactic acid bacteria activate the proPO system and increase resistance to an AHPND-causing strain of Vibrio parahaemolyticus in the shrimp Litopenaeus vannamei
- (2018) Sudarat Chomwong et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- How complete are “complete” genome assemblies?-An avian perspective
- (2018) Valentina Peona et al. Molecular Ecology Resources
- Deconvolution of pro- and antiviral genomic responses in Zika virus-infected and bystander macrophages
- (2018) Aaron F. Carlin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers
- (2018) Melissa K. Takahashi et al. Nature Communications
- Evidence that RNA Viruses Drove Adaptive Introgression between Neanderthals and Modern Humans
- (2018) David Enard et al. CELL
- Evolution of Copy Number at the MHC Varies across the Avian Tree of Life
- (2018) Piotr Minias et al. Genome Biology and Evolution
- Experimental evolution of a fungal pathogen into a gut symbiont
- (2018) Gloria Hoi Wan Tso et al. SCIENCE
- Avian Toll-like receptor allelic diversity far exceeds human polymorphism: an insight from domestic chicken breeds
- (2018) Zuzana Świderská et al. Scientific Reports
- Analysis validation has been neglected in the Age of Reproducibility
- (2018) Kathleen E. Lotterhos et al. PLOS BIOLOGY
- Dual Transcriptomics of Host-Pathogen Interaction of Cystic Fibrosis Isolate Pseudomonas aeruginosa PASS1 With Zebrafish
- (2018) Sheemal S. Kumar et al. Frontiers in Cellular and Infection Microbiology
- The role of the microbiota in infectious diseases
- (2018) Josie Libertucci et al. Nature Microbiology
- GISAID: Global initiative on sharing all influenza data – from vision to reality
- (2017) Yuelong Shu et al. Eurosurveillance
- Parasitism drives host genome evolution: Insights from thePasteuria ramosa-Daphnia magnasystem
- (2017) Yann Bourgeois et al. EVOLUTION
- Host effects on microbiota community assembly
- (2017) Kathrin Näpflin et al. JOURNAL OF ANIMAL ECOLOGY
- Parasite life-cycle studies: a plea to resurrect an old parasitological tradition
- (2017) I. Blasco-Costa et al. JOURNAL OF HELMINTHOLOGY
- Brachyspira hyodysenteriae Infection Regulates Mucin Glycosylation Synthesis Inducing an Increased Expression of Core-2 O-Glycans in Porcine Colon
- (2017) Vignesh Venkatakrishnan et al. JOURNAL OF PROTEOME RESEARCH
- Genomic evolution of bacterial populations under coselection by antibiotics and phage
- (2017) Johannes Cairns et al. MOLECULAR ECOLOGY
- Proteomics and integrative omic approaches for understanding host–pathogen interactions and infectious diseases
- (2017) Pierre M Jean Beltran et al. Molecular Systems Biology
- Frequency dependence limits divergent evolution by favouring rare immigrants over residents
- (2017) Daniel I. Bolnick et al. NATURE
- Host and viral traits predict zoonotic spillover from mammals
- (2017) Kevin J. Olival et al. NATURE
- Establishment and cryptic transmission of Zika virus in Brazil and the Americas
- (2017) N. R. Faria et al. NATURE
- Genomic epidemiology reveals multiple introductions of Zika virus into the United States
- (2017) Nathan D. Grubaugh et al. NATURE
- Virus genomes reveal factors that spread and sustained the Ebola epidemic
- (2017) Gytis Dudas et al. NATURE
- The Evolutionary Consequences of Stepwise Infection Processes
- (2017) Matthew D. Hall et al. TRENDS IN ECOLOGY & EVOLUTION
- BabA dependent binding of Helicobacter pylori to human gastric mucins cause aggregation that inhibits proliferation and is regulated via ArsS
- (2017) Emma C. Skoog et al. Scientific Reports
- Resolving host–pathogen interactions by dual RNA-seq
- (2017) Alexander J. Westermann et al. PLoS Pathogens
- Pathogen metadata platform: software for accessing and analyzing pathogen strain information
- (2016) Wenling E. Chang et al. BMC BIOINFORMATICS
- Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations
- (2016) Hélène Quach et al. CELL
- Immunotoxic effects of environmental pollutants in marine mammals
- (2016) Jean-Pierre W. Desforges et al. ENVIRONMENT INTERNATIONAL
- Depletion of Human DNA in Spiked Clinical Specimens for Improvement of Sensitivity of Pathogen Detection by Next-Generation Sequencing
- (2016) Mohammad R. Hasan et al. JOURNAL OF CLINICAL MICROBIOLOGY
- House Finch (Haemorhous mexicanus) Conjunctivitis, and Mycoplasma spp. Isolated from North American Wild Birds, 1994–2015
- (2016) David H. Ley et al. JOURNAL OF WILDLIFE DISEASES
- EuPathDB: the eukaryotic pathogen genomics database resource
- (2016) Cristina Aurrecoechea et al. NUCLEIC ACIDS RESEARCH
- When pathogenic bacteria meet the intestinal microbiota
- (2016) Nathalie Rolhion et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Human drivers of ecological and evolutionary dynamics in emerging and disappearing infectious disease systems
- (2016) Mary A. Rogalski et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Early gut colonizers shape parasite susceptibility and microbiota composition in honey bee workers
- (2016) Ryan S. Schwarz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Composition of the gut microbiota modulates the severity of malaria
- (2016) Nicolas F. Villarino et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Host–pathogen evolutionary signatures reveal dynamics and future invasions of vampire bat rabies
- (2016) Daniel G. Streicker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Immune response and gut microbial community structure in bumblebees after microbiota transplants
- (2016) Kathrin Näpflin et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock
- (2016) Pauline L. Kamath et al. Nature Communications
- Protocols.io: Virtual Communities for Protocol Development and Discussion
- (2016) Leonid Teytelman et al. PLOS BIOLOGY
- The Legacy of Past Pandemics: Common Human Mutations That Protect against Infectious Disease
- (2016) Kelly J. Pittman et al. PLoS Pathogens
- Viruses are a dominant driver of protein adaptation in mammals
- (2016) David Enard et al. eLife
- Genomic Analysis of Viral Outbreaks
- (2016) Shirlee Wohl et al. Annual Review of Virology
- PCB pollution continues to impact populations of orcas and other dolphins in European waters
- (2016) Paul D. Jepson et al. Scientific Reports
- Understanding the ecology and evolution of host-parasite interactions across scales
- (2015) Rachel M. Penczykowski et al. Evolutionary Applications
- A world without parasites: exploring the hidden ecology of infection
- (2015) Chelsea L Wood et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- RNA-seq based transcriptomic analysis of single bacterial cells
- (2015) Jiangxin Wang et al. Integrative Biology
- Metagenomics: A New Way to Illustrate the Crosstalk between Infectious Diseases and Host Microbiome
- (2015) Yinfeng Zhang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Coevolution with Bacteriophages Drives Genome-Wide Host Evolution and Constrains the Acquisition of Abiotic-Beneficial Mutations
- (2015) Pauline D. Scanlan et al. MOLECULAR BIOLOGY AND EVOLUTION
- A novel locus of resistance to severe malaria in a region of ancient balancing selection
- (2015) NATURE
- Improved genome inference in the MHC using a population reference graph
- (2015) Alexander Dilthey et al. NATURE GENETICS
- The O-Linked Glycome and Blood Group Antigens ABO on Mucin-Type Glycoproteins in Mucinous and Serous Epithelial Ovarian Tumors
- (2015) Varvara Vitiazeva et al. PLoS One
- Hidden costs of infection: Chronic malaria accelerates telomere degradation and senescence in wild birds
- (2015) M. Asghar et al. SCIENCE
- The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster
- (2015) Claire L. Webster et al. PLOS BIOLOGY
- Closing the genotype-phenotype gap: Emerging technologies for evolutionary genetics in ecological model vertebrate systems
- (2014) Claudius F. Kratochwil et al. BIOESSAYS
- A house finch (Haemorhous mexicanus) spleen transcriptome reveals intra- and interspecific patterns of gene expression, alternative splicing and genetic diversity in passerines
- (2014) Qu Zhang et al. BMC GENOMICS
- Aeromonas salmonicida Binds Differentially to Mucins Isolated from Skin and Intestinal Regions of Atlantic Salmon in anN-Acetylneuraminic Acid-Dependent Manner
- (2014) János T. Padra et al. INFECTION AND IMMUNITY
- Parasite biodiversity revisited: frontiers and constraints
- (2014) Robert Poulin INTERNATIONAL JOURNAL FOR PARASITOLOGY
- Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata)
- (2014) Jackie Lighten et al. Molecular Ecology Resources
- Gut microbiota–generated metabolites in animal health and disease
- (2014) Won-Jae Lee et al. Nature Chemical Biology
- Natural selection and infectious disease in human populations
- (2014) Elinor K. Karlsson et al. NATURE REVIEWS GENETICS
- Single-cell RNA-seq: advances and future challenges
- (2014) Antoine-Emmanuel Saliba et al. NUCLEIC ACIDS RESEARCH
- The IPD and IMGT/HLA database: allele variant databases
- (2014) James Robinson et al. NUCLEIC ACIDS RESEARCH
- Differences in susceptibility and immune responses of three-spined sticklebacks (Gasterosteus aculeatus) from lake and river ecotypes to sequential infections with the eye fluke Diplostomum pseudospathaceum
- (2014) Jörn Scharsack et al. Parasites & Vectors
- Bat Distribution Size or Shape as Determinant of Viral Richness in African Bats
- (2014) Gaël D. Maganga et al. PLoS One
- Standardized Metadata for Human Pathogen/Vector Genomic Sequences
- (2014) Vivien G. Dugan et al. PLoS One
- Viewing forests through the lens of complex systems science
- (2014) Elise Filotas et al. Ecosphere
- Detecting Natural Selection in Genomic Data
- (2013) Joseph J. Vitti et al. Annual Review of Genetics
- Viral pathogen discovery
- (2013) Charles Y Chiu CURRENT OPINION IN MICROBIOLOGY
- Evidence for Polygenic Adaptation to Pathogens in the Human Genome
- (2013) Josephine T. Daub et al. MOLECULAR BIOLOGY AND EVOLUTION
- Control of pathogens and pathobionts by the gut microbiota
- (2013) Nobuhiko Kamada et al. NATURE IMMUNOLOGY
- Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution
- (2013) D. M. de Vienne et al. NEW PHYTOLOGIST
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Distinct antimicrobial peptide expression determines host species-specific bacterial associations
- (2013) S. Franzenburg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Polymorphisms at the innate immune receptor TLR2 are associated with Borrelia infection in a wild rodent population
- (2013) B. Tschirren et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control
- (2013) István Bartha et al. eLife
- Host mucin glycosylation plays a role in bacterial adhesion in lungs of individuals with cystic fibrosis
- (2013) Vignesh Venkatakrishnan et al. Expert Review of Respiratory Medicine
- Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC
- (2012) Yuanyuan Cheng et al. BMC GENOMICS
- A new method for isolation of purified genomic DNA from haemosporidian parasites inhabiting nucleated red blood cells
- (2012) Vaidas Palinauskas et al. EXPERIMENTAL PARASITOLOGY
- The changing face of pathogen discovery and surveillance
- (2012) W. Ian Lipkin NATURE REVIEWS MICROBIOLOGY
- Epigenetics of Host–Pathogen Interactions: The Road Ahead and the Road Behind
- (2012) Elena Gómez-Díaz et al. PLoS Pathogens
- Signatures of historical demography and pathogen richness on MHC class I genes
- (2011) Nouar Qutob et al. IMMUNOGENETICS
- The expression of virulence during double infections by different parasites with conflicting host exploitation and transmission strategies
- (2011) F. BEN-AMI et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Increased migration in host–pathogen metapopulations can cause host extinction
- (2011) K.C. Harding et al. JOURNAL OF THEORETICAL BIOLOGY
- A draft genome of Yersinia pestis from victims of the Black Death
- (2011) Kirsten I. Bos et al. NATURE
- Mucin dynamics and enteric pathogens
- (2011) Michael A. McGuckin et al. NATURE REVIEWS MICROBIOLOGY
- MHC genotypes associate with resistance to a frog-killing fungus
- (2011) A. E. Savage et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Susceptibility to winter vomiting disease: a sweet matter
- (2011) Gustaf E. Rydell et al. REVIEWS IN MEDICAL VIROLOGY
- Animal Migration and Infectious Disease Risk
- (2011) S. Altizer et al. SCIENCE
- Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution
- (2011) Matteo Fumagalli et al. PLoS Genetics
- Hybrid selection for sequencing pathogen genomes from clinical samples
- (2011) Alexandre Melnikov et al. GENOME BIOLOGY
- Gene duplication and fragmentation in the zebra finch major histocompatibility complex
- (2010) Christopher N Balakrishnan et al. BMC BIOLOGY
- Role of Mucin Lewis Status in Resistance to Helicobacter pylori Infection in Pediatric Patients
- (2010) Sara Lindén et al. HELICOBACTER
- From Structure to Function: the Ecology of Host-Associated Microbial Communities
- (2010) C. J. Robinson et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Gut Microbiota in Health and Disease
- (2010) Inna Sekirov et al. PHYSIOLOGICAL REVIEWS
- How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings
- (2010) L. G. Spurgin et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Species Interactions in a Parasite Community Drive Infection Risk in a Wildlife Population
- (2010) Sandra Telfer et al. SCIENCE
- MalAvi: a public database of malaria parasites and related haemosporidians in avian hosts based on mitochondrial cytochromeblineages
- (2009) STAFFAN BENSCH et al. Molecular Ecology Resources
- Major histocompatibility complex (MHC) heterozygote superiority to natural multi-parasite infections in the water vole (Arvicola terrestris)
- (2009) M.K Oliver et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Poverty trap formed by the ecology of infectious diseases
- (2009) M. H. Bonds et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- MUC1 Limits Helicobacter pylori Infection both by Steric Hindrance and by Acting as a Releasable Decoy
- (2009) Sara K. Lindén et al. PLoS Pathogens
- Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories
- (2008) P.C.Y. Woo et al. CLINICAL MICROBIOLOGY AND INFECTION
- Causal inference in disease ecology: investigating ecological drivers of disease emergence
- (2008) Raina K Plowright et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Mucins in the mucosal barrier to infection
- (2008) S K Linden et al. Mucosal Immunology
- Ecosystem energetic implications of parasite and free-living biomass in three estuaries
- (2008) Armand M. Kuris et al. NATURE
- Global trends in emerging infectious diseases
- (2008) Kate E. Jones et al. NATURE
- Role of ABO Secretor Status in Mucosal Innate Immunity and H. pylori Infection
- (2008) Sara Lindén et al. PLoS Pathogens
- Ecological rules governing helminth microparasite coinfection
- (2008) A. L. Graham PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Homage to Linnaeus: How many parasites? How many hosts?
- (2008) A. Dobson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Patterns of Positive Selection in Six Mammalian Genomes
- (2008) Carolin Kosiol et al. PLoS Genetics
- Climate‐Driven Spatial Dynamics of Plague among Prairie Dog Colonies
- (2007) T. Snäll et al. AMERICAN NATURALIST
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now