Differential Contribution of the Parental Genomes to a S. cerevisiae × S. uvarum Hybrid, Inferred by Phenomic, Genomic, and Transcriptomic Analyses, at Different Industrial Stress Conditions

Genome structure reveals the diversity of mating mechanisms in Saccharomyces cerevisiae x Saccharomyces kudriavzevii hybrids, and the genomic instability that promotes phenotypic diversity

(2020) Miguel Morard et al.   Microbial Genomics

Improving the Cryotolerance of Wine Yeast by Interspecific Hybridization in the Genus Saccharomyces

(2019) Estéfani García-Ríos et al.   Frontiers in Microbiology

Comparative Genomics Between Saccharomyces kudriavzevii and S. cerevisiae Applied to Identify Mechanisms Involved in Adaptation

(2019) Laura G. Macías et al.   Frontiers in Genetics

Aneuploidy and Ethanol Tolerance in Saccharomyces cerevisiae

(2019) Miguel Morard et al.   Frontiers in Genetics

Dominance of wine Saccharomyces cerevisiae strains over S. kudriavzevii in industrial fermentation competitions is related to an acceleration of nutrient uptake and utilization

(2019) Javier Alonso-del-Real et al.   ENVIRONMENTAL MICROBIOLOGY

Saccharomyces cerevisiae × Saccharomyces uvarum hybrids generated under different conditions share similar winemaking features

(2018) Andrea Cecilia Origone et al.   YEAST

sppIDer: A Species Identification Tool to Investigate Hybrid Genomes with High-Throughput Sequencing

(2018) Quinn K Langdon et al.   MOLECULAR BIOLOGY AND EVOLUTION

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Interspecies Hybridisation and Genome Chimerisation in Saccharomyces: Combining of Gene Pools of Species and Its Biotechnological Perspectives

(2018) Matthias Sipiczki   Frontiers in Microbiology

Tolerance to winemaking stress conditions of Patagonian strains of Saccharomyces eubayanus and Saccharomyces uvarum

(2017) A.C. Origone et al.   JOURNAL OF APPLIED MICROBIOLOGY

On the origins and industrial applications of Saccharomyces cerevisiae × Saccharomyces kudriavzevii hybrids

(2017) David Peris et al.   YEAST

Effect of Temperature on the Prevalence of Saccharomyces Non cerevisiae Species against a S. cerevisiae Wine Strain in Wine Fermentation: Competition, Physiological Fitness, and Influence in Final Wine Composition

(2017) Javier Alonso-del-Real et al.   Frontiers in Microbiology

Alternative Glycerol Balance Strategies among Saccharomyces Species in Response to Winemaking Stress

(2016) Roberto Pérez-Torrado et al.   Frontiers in Microbiology

S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond

(2015) Marit Hebly et al.   FEMS YEAST RESEARCH

Saccharomyces kudriavzevii and Saccharomyces uvarum differ from Saccharomyces cerevisiae during the production of aroma-active higher alcohols and acetate esters using their amino acidic precursors

(2015) Jiri Stribny et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Molecular and enological characterization of a natural Saccharomyces uvarum and Saccharomyces cerevisiae hybrid

(2015) Roberto Pérez-Torrado et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Transcriptomics of cryophilic Saccharomyces kudriavzevii reveals the key role of gene translation efficiency in cold stress adaptations

(2014) Jordi Tronchoni et al.   BMC GENOMICS

Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq

(2014) Jeffrey E Barrick et al.   BMC GENOMICS

Enhanced Enzymatic Activity of Glycerol-3-Phosphate Dehydrogenase from the Cryophilic Saccharomyces kudriavzevii

(2014) Bruno M. Oliveira et al.   PLoS One

On the Complexity of the Saccharomyces bayanus Taxon: Hybridization and Potential Hybrid Speciation

(2014) Laura Pérez-Través et al.   PLoS One

The ecology and evolution of non-domesticatedSaccharomycesspecies

(2014) Primrose J. Boynton et al.   YEAST

Production of aroma compounds by cryotolerantSaccharomycesspecies and hybrids at low and moderate fermentation temperatures

(2013) A. Gamero et al.   JOURNAL OF APPLIED MICROBIOLOGY

Characterization of Chromosome Stability in Diploid, Polyploid and Hybrid Yeast Cells

(2013) Rajaraman Kumaran et al.   PLoS One

Role of Unsaturated Lipid and Ergosterol in Ethanol Tolerance of Model Yeast Biomembranes

(2012) Juan M. Vanegas et al.   BIOPHYSICAL JOURNAL

Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve

(2012) Jeff S Piotrowski et al.   BMC EVOLUTIONARY BIOLOGY

Comparative genomics among Saccharomyces cerevisiae × Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins

(2012) David Peris et al.   BMC GENOMICS

Evaluation of different genetic procedures for the generation of artificial hybrids in Saccharomyces genus for winemaking

(2012) Laura Pérez-Través et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

Quantifying the individual effects of ethanol and temperature on the fitness advantage of Saccharomyces cerevisiae

(2011) Z. Salvadó et al.   FOOD MICROBIOLOGY

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

(2011) A. Abyzov et al.   GENOME RESEARCH

RATT: Rapid Annotation Transfer Tool

(2011) Thomas D. Otto et al.   NUCLEIC ACIDS RESEARCH

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

(2011) Devin R. Scannell et al.   G3-Genes Genomes Genetics

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

SOPRA: Scaffolding algorithm for paired reads via statistical optimization

(2010) Adel Dayarian et al.   BMC BIOINFORMATICS

Reassessment of phenotypic traits for Saccharomyces bayanus var. uvarum wine yeast strains

(2010) Isabelle Masneuf-Pomarède et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Susceptibility and resistance to ethanol in Saccharomyces strains isolated from wild and fermentative environments

(2010) F. N. Arroyo-López et al.   YEAST

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response

(2009) Virginia D. Marks et al.   FEMS YEAST RESEARCH

Microarray karyotyping of maltose-fermentingSaccharomycesyeasts with differing maltotriose utilization profiles reveals copy number variation in genes involved in maltose and maltotriose utilization

(2009) E.H. Duval et al.   JOURNAL OF APPLIED MICROBIOLOGY

Interspecies hybridization and recombination inSaccharomyceswine yeasts

(2008) Matthias Sipiczki   FEMS YEAST RESEARCH

Global Screening of Genes Essential for Growth in High-Pressure and Cold Environments: Searching for Basic Adaptive Strategies Using a Yeast Deletion Library

(2008) F. Abe et al.   GENETICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Fermentative stress adaptation of hybrids within the Saccharomyces sensu stricto complex

(2008) C BELLOCH   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH