Animal Functional Magnetic Resonance Imaging: Trends and Path Toward Standardization

A brain-wide functional map of the serotonergic responses to acute stress and fluoxetine

(2019) Joanes Grandjean et al.   Nature Communications

Deletion of autism risk gene Shank3 disrupts prefrontal connectivity

(2019) Marco Pagani et al.   JOURNAL OF NEUROSCIENCE

Mouse BOLD fMRI at ultrahigh field detects somatosensory networks including thalamic nuclei

(2019) Won Beom Jung et al.   NEUROIMAGE

The brain’s default network: updated anatomy, physiology and evolving insights

(2019) Randy L. Buckner et al.   NATURE REVIEWS NEUROSCIENCE

Resting-state Dynamics as a Cortical Signature of Anesthesia in Monkeys

(2018) Lynn Uhrig et al.   ANESTHESIOLOGY

Autism-associated 16p11.2 microdeletion impairs prefrontal functional connectivity in mouse and human

(2018) Alice Bertero et al.   BRAIN

Reduced resting-state functional connectivity of the basolateral amygdala to the medial prefrontal cortex in preweaning rats exposed to chronic early-life stress

(2018) Angela Guadagno et al.   Brain Structure & Function

Parametric Dependencies of Sliding Window Correlation

(2018) Sadia Shakil et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Quantitative blood flow measurement in rat brain with multiphase arterial spin labelling magnetic resonance imaging

(2018) James R Larkin et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Chemogenetic modulation of cholinergic interneurons reveals their regulating role on the direct and indirect output pathways from the striatum

(2018) Patrick Aldrin-Kirk et al.   NEUROBIOLOGY OF DISEASE

Line scanning fMRI reveals earlier onset of optogenetically evoked BOLD response in rat somatosensory cortex as compared to sensory stimulation

(2018) Franziska Albers et al.   NEUROIMAGE

Co-activation patterns in resting-state fMRI signals

(2018) Xiao Liu et al.   NEUROIMAGE

Optogenetic fMRI and electrophysiological identification of region-specific connectivity between the cerebellar cortex and forebrain

(2018) Katrina Y. Choe et al.   NEUROIMAGE

Contributions of dopaminergic and non-dopaminergic neurons to VTA-stimulation induced neurovascular responses in brain reward circuits

(2018) Marta Brocka et al.   NEUROIMAGE

Mouse fMRI under ketamine and xylazine anesthesia: Robust contralateral somatosensory cortex activation in response to forepaw stimulation

(2018) Hyun-Ji Shim et al.   NEUROIMAGE

Somatosensory BOLD fMRI reveals close link between salient blood pressure changes and the murine neuromatrix

(2018) Henning Matthias Reimann et al.   NEUROIMAGE

Functional connectivity under six anesthesia protocols and the awake condition in rat brain

(2018) Jaakko Paasonen et al.   NEUROIMAGE

CNO Evil? Considerations for the Use of DREADDs in Behavioral Neuroscience

(2018) Stephen V Mahler et al.   NEUROPSYCHOPHARMACOLOGY

Evaluation of prolonged administration of isoflurane on cerebral blood flow and default mode network in macaque monkeys anesthetized with different maintenance doses

(2018) Chun-Xia Li et al.   NEUROSCIENCE LETTERS

Optogenetic auditory fMRI reveals the effects of visual cortical inputs on auditory midbrain response

(2018) Alex T. L. Leong et al.   Scientific Reports

Resting state brain networks in the prairie vole

(2018) Juan J. Ortiz et al.   Scientific Reports

Quasi-Periodic Patterns of Neural Activity improve Classification of Alzheimer’s Disease in Mice

(2018) Michaël E. Belloy et al.   Scientific Reports

The Relationship Between Dopamine Neurotransmitter Dynamics and the Blood-Oxygen-Level-Dependent (BOLD) Signal: A Review of Pharmacological Functional Magnetic Resonance Imaging

(2018) Tyler J. Bruinsma et al.   Frontiers in Neuroscience

Making Sense of Pharmacology: Inverse Agonism and Functional Selectivity

(2018) Kelly A Berg et al.   INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY

Gradient-echo and spin-echo blood oxygenation level-dependent functional MRI at ultrahigh fields of 9.4 and 15.2 Tesla

(2018) SoHyun Han et al.   MAGNETIC RESONANCE IN MEDICINE

Genetic identification of a population of noradrenergic neurons implicated in attenuation of stress-related responses

(2018) Yu-Wei Chen et al.   MOLECULAR PSYCHIATRY

Layer-specific connectivity revealed by diffusion-weighted functional MRI in the rat thalamocortical pathway

(2018) Daniel Nunes et al.   NEUROIMAGE

An Open Resource for Non-human Primate Imaging

(2018) Michael P. Milham et al.   NEURON

Connectomic imaging reveals Huntington-related pathological and pharmaceutical effects in a mouse model

(2018) Wei-Tang Chang et al.   NMR IN BIOMEDICINE

Genetically defined cellular correlates of the baseline brain MRI signal

(2018) Jie Wen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The DREADD agonist clozapine N-oxide (CNO) is reverse-metabolized to clozapine and produces clozapine-like interoceptive stimulus effects in rats and mice

(2018) Daniel F. Manvich et al.   Scientific Reports

Increasing isoflurane dose reduces homotopic correlation and functional segregation of brain networks in mice as revealed by resting-state fMRI

(2018) Q. Bukhari et al.   Scientific Reports

Effects of stress on behavior and resting-state fMRI in rats and evaluation of Telmisartan therapy in a stress-induced depression model

(2018) Junling Li et al.   BMC Psychiatry

Contrast-Enhanced Magnetic Resonance Angiography Using a Novel Elastin-Specific Molecular Probe in an Experimental Animal Model

(2018) Carolin Reimann et al.   Contrast Media & Molecular Imaging

A systematic review on the quantitative relationship between structural and functional network connectivity strength in mammalian brains

(2018) Milou Straathof et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Central amygdala circuit dynamics underlying the benzodiazepine anxiolytic effect

(2018) Johannes Griessner et al.   MOLECULAR PSYCHIATRY

fMRIPrep: a robust preprocessing pipeline for functional MRI

(2018) Oscar Esteban et al.   NATURE METHODS

Structural Basis of Large-Scale Functional Connectivity in the Mouse

(2017) Joanes Grandjean et al.   JOURNAL OF NEUROSCIENCE

Ketamine changes the local resting-state functional properties of anesthetized-monkey brain

(2017) Jia-Sheng Rao et al.   MAGNETIC RESONANCE IMAGING

Best practices in data analysis and sharing in neuroimaging using MRI

(2017) Thomas E Nichols et al.   NATURE NEUROSCIENCE

Altered regional connectivity reflecting effects of different anaesthesia protocols in the mouse brain

(2017) Tong Wu et al.   NEUROIMAGE

A novel approach to map induced activation of neuronal networks using chemogenetics and functional neuroimaging in rats: A proof-of-concept study on the mesocorticolimbic system

(2017) Theresia J.M. Roelofs et al.   NEUROIMAGE

The impact of vessel size, orientation and intravascular contribution on the neurovascular fingerprint of BOLD bSSFP fMRI

(2017) Mario Gilberto Báez-Yánez et al.   NEUROIMAGE

Replicability of time-varying connectivity patterns in large resting state fMRI samples

(2017) Anees Abrol et al.   NEUROIMAGE

Dynamic reorganization of intrinsic functional networks in the mouse brain

(2017) Joanes Grandjean et al.   NEUROIMAGE

Interpreting temporal fluctuations in resting-state functional connectivity MRI

(2017) Raphaël Liégeois et al.   NEUROIMAGE

Low-frequency hippocampal–cortical activity drives brain-wide resting-state functional MRI connectivity

(2017) Russell W. Chan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemogenetics revealed: DREADD occupancy and activation via converted clozapine

(2017) Juan L. Gomez et al.   SCIENCE

Resting State fMRI in Mice Reveals Anesthesia Specific Signatures of Brain Functional Networks and Their Interactions

(2017) Qasim Bukhari et al.   Frontiers in Neural Circuits

Light controls cerebral blood flow in naive animals

(2017) Ravi L Rungta et al.   Nature Communications

Brain-wide Mapping of Endogenous Serotonergic Transmission via Chemogenetic fMRI

(2017) Andrea Giorgi et al.   Cell Reports

Water diffusion closely reveals neural activity status in rat brain loci affected by anesthesia

(2017) Yoshifumi Abe et al.   PLOS BIOLOGY

Modular Brain Networks

(2016) Olaf Sporns et al.   Annual Review of Psychology

DREADDS: Use and application in behavioral neuroscience.

(2016) Kyle S. Smith et al.   BEHAVIORAL NEUROSCIENCE

On the Stability of BOLD fMRI Correlations

(2016) Timothy O. Laumann et al.   CEREBRAL CORTEX

Cre-dependent DREADD (Designer Receptors Exclusively Activated by Designer Drugs) mice

(2016) Hu Zhu et al.   GENESIS

Assessing sensory versus optogenetic network activation by combining (o)fMRI with optical Ca2+ recordings

(2016) Florian Schmid et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Tissue damage thresholds during therapeutic electrical stimulation

(2016) Stuart F Cogan et al.   Journal of Neural Engineering

Physiological effects of a habituation procedure for functional MRI in awake mice using a cryogenic radiofrequency probe

(2016) Keitaro Yoshida et al.   JOURNAL OF NEUROSCIENCE METHODS

Wavelet-based clustering of resting state MRI data in the rat

(2016) Alessio Medda et al.   MAGNETIC RESONANCE IMAGING

True and apparent optogenetic BOLDfMRI signals

(2016) Florian Schmid et al.   MAGNETIC RESONANCE IN MEDICINE

Unexpected global impact of VTA dopamine neuron activation as measured by opto-fMRI

(2016) S Lohani et al.   MOLECULAR PSYCHIATRY

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

(2016) Karla L Miller et al.   NATURE NEUROSCIENCE

Resting state network topology of the ferret brain

(2016) Zhe Charles Zhou et al.   NEUROIMAGE

Direct detection of optogenetically evoked oscillatory neuronal electrical activity in rats using SLOE sequence

(2016) Yuhui Chai et al.   NEUROIMAGE

Quantitative mapping of cerebrovascular reactivity using resting-state BOLD fMRI: Validation in healthy adults

(2016) Ali M. Golestani et al.   NEUROIMAGE

Combining optogenetic stimulation and fMRI to validate a multivariate dynamical systems model for estimating causal brain interactions

(2016) Srikanth Ryali et al.   NEUROIMAGE

Intrinsic connectivity of neural networks in the awake rabbit

(2016) Matthew P. Schroeder et al.   NEUROIMAGE

Large-scale functional connectivity networks in the rodent brain

(2016) Alessandro Gozzi et al.   NEUROIMAGE

XNAT Central: Open sourcing imaging research data

(2016) Rick Herrick et al.   NEUROIMAGE

The Rhesus Monkey Connectome Predicts Disrupted Functional Networks Resulting from Pharmacogenetic Inactivation of the Amygdala

(2016) David S. Grayson et al.   NEURON

DREADDs for Neuroscientists

(2016) Bryan L. Roth   NEURON

Coordination of Brain-Wide Activity Dynamics by Dopaminergic Neurons

(2016) Heather K Decot et al.   NEUROPSYCHOPHARMACOLOGY

FEF inactivation with improved optogenetic methods

(2016) Leah Acker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates

(2016) Anders Eklund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombinase-Dependent Mouse Lines for Chemogenetic Activation of Genetically Defined Cell Types

(2016) Natale R. Sciolino et al.   Cell Reports

A Hitchhiker's Guide to Functional Magnetic Resonance Imaging

(2016) José M. Soares et al.   Frontiers in Neuroscience

Optogenetic Functional MRI

(2016) Peter Lin et al.   Jove-Journal of Visualized Experiments

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

(2016) Krzysztof J. Gorgolewski et al.   Scientific Data

Functional Magnetic Resonance Imaging of Electrical and Optogenetic Deep Brain Stimulation at the Rat Nucleus Accumbens

(2016) Daniel L. Albaugh et al.   Scientific Reports

Optical manipulation of the alpha subunits of heterotrimeric G proteins using photoswitchable dimerization systems

(2016) Gaigai Yu et al.   Scientific Reports

The Brain's Default Mode Network

(2015) Marcus E. Raichle   Annual Review of Neuroscience

Cholinergic and serotonergic modulations differentially affect large-scale functional networks in the mouse brain

(2015) Disha Shah et al.   Brain Structure & Function

Superior temporal resolution of Chronos versus channelrhodopsin-2 in an optogenetic model of the auditory brainstem implant

(2015) Ariel Edward Hight et al.   HEARING RESEARCH

Making Sense of Optogenetics

(2015) Akash Guru et al.   INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY

Neural and Hemodynamic Responses to Optogenetic and Sensory Stimulation in the Rat Somatosensory Cortex

(2015) Bistra Iordanova et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

High-resolution mapping of neuronal activation with balanced SSFP at 9.4 tesla

(2015) Klaus Scheffler et al.   MAGNETIC RESONANCE IN MEDICINE

Robust methods to create ex vivo minimum deformation atlases for brain mapping

(2015) Andrew L. Janke et al.   METHODS

Erratum: Optogenetics and the future of neuroscience

(2015) Edward S Boyden   NATURE NEUROSCIENCE

Optogenetics: 10 years of microbial opsins in neuroscience

(2015) Karl Deisseroth   NATURE NEUROSCIENCE

The hemodynamic response to somatosensory stimulation in mice depends on the anesthetic used: Implications on analysis of mouse fMRI data

(2015) Felix Schlegel et al.   NEUROIMAGE

Functional connectivity hubs of the mouse brain

(2015) Adam Liska et al.   NEUROIMAGE

Acute modulation of the cholinergic system in the mouse brain detected by pharmacological resting-state functional MRI

(2015) Disha Shah et al.   NEUROIMAGE

Role of white-matter pathways in coordinating alpha oscillations in resting visual cortex

(2015) R. Hindriks et al.   NEUROIMAGE

Mapping the functional network of medial prefrontal cortex by combining optogenetics and fMRI in awake rats

(2015) Zhifeng Liang et al.   NEUROIMAGE

Dynamic resting state functional connectivity in awake and anesthetized rodents

(2015) Zhifeng Liang et al.   NEUROIMAGE

Mapping the mouse brain with rs-fMRI: An optimized pipeline for functional network identification

(2015) Valerio Zerbi et al.   NEUROIMAGE

Optogenetic fMRI reveals distinct, frequency-dependent networks recruited by dorsal and intermediate hippocampus stimulations

(2015) Andrew J. Weitz et al.   NEUROIMAGE

On spurious and real fluctuations of dynamic functional connectivity during rest

(2015) Nora Leonardi et al.   NEUROIMAGE

The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content

(2015) Rembrandt Bakker et al.   NEUROINFORMATICS

Signature of consciousness in the dynamics of resting-state brain activity

(2015) Pablo Barttfeld et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prefrontal cortical regulation of brainwide circuit dynamics and reward-related behavior

(2015) E. A. Ferenczi et al.   SCIENCE

Modeling the Spatiotemporal Dynamics of Light and Heat Propagation for In Vivo Optogenetics

(2015) Joseph M. Stujenske et al.   Cell Reports

Targeted genetic manipulations of neuronal subtypes using promoter-specific combinatorial AAVs in wild-type animals

(2015) Heinrich S. Gompf et al.   Frontiers in Behavioral Neuroscience

Chemogenetics—A Transformational and Translational Platform

(2015) Justin G. English et al.   JAMA Neurology

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain

(2015) Krzysztof J. Gorgolewski et al.   Frontiers in Neuroinformatics

Considerations for resting state functional MRI and functional connectivity studies in rodents

(2015) Wen-Ju Pan et al.   Frontiers in Neuroscience

The power of using functional fMRI on small rodents to study brain pharmacology and disease

(2015) Elisabeth Jonckers et al.   Frontiers in Pharmacology

Optogenetic Activation of CA1 Pyramidal Neurons at the Dorsal and Ventral Hippocampus Evokes Distinct Brain-Wide Responses Revealed by Mouse fMRI

(2015) Norio Takata et al.   PLoS One

Anterior–posterior dissociation of the default mode network in dogs

(2014) Sreenath P. Kyathanahally et al.   Brain Structure & Function

An insight into short- and long-term mechanical circulatory support systems

(2014) Markus Ferrari et al.   Clinical Research in Cardiology

Isoflurane induces dose-dependent alterations in the cortical connectivity profiles and dynamic properties of the brain's functional architecture

(2014) R. Matthew Hutchison et al.   HUMAN BRAIN MAPPING

Imaging Neurovascular Function and Functional Recovery after Stroke in the Rat Striatum Using Forepaw Stimulation

(2014) Yen-Yu Ian Shih et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Bridging the Gap between the Human and Macaque Connectome: A Quantitative Comparison of Global Interspecies Structure-Function Relationships and Network Topology

(2014) O. Miranda-Dominguez et al.   JOURNAL OF NEUROSCIENCE

Robust deep brain stimulation functional MRI procedures in rats and mice using an MR-compatible tungsten microwire electrode

(2014) Hsin-Yi Lai et al.   MAGNETIC RESONANCE IN MEDICINE

Erratum: Addendum: Independent optical excitation of distinct neural populations

(2014) Nathan C Klapoetke et al.   NATURE METHODS

Noninvasive optical inhibition with a red-shifted microbial rhodopsin

(2014) Amy S Chuong et al.   NATURE NEUROSCIENCE

Optimization of anesthesia protocol for resting-state fMRI in mice based on differential effects of anesthetics on functional connectivity patterns

(2014) Joanes Grandjean et al.   NEUROIMAGE

Differentiating BOLD and non-BOLD signals in fMRI time series from anesthetized rats using multi-echo EPI at 11.7T

(2014) Prantik Kundu et al.   NEUROIMAGE

Fine-grained mapping of mouse brain functional connectivity with resting-state fMRI

(2014) Anna E. Mechling et al.   NEUROIMAGE

Specificity of stimulus-evoked fMRI responses in the mouse: The influence of systemic physiological changes associated with innocuous stimulation under four different anesthetics

(2014) Aileen Schroeter et al.   NEUROIMAGE

Test-retest reliabilities of resting-state FMRI measurements in human brain functional connectomics: A systems neuroscience perspective

(2014) Xi-Nian Zuo et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Time-dependent effects of isoflurane and dexmedetomidine on functional connectivity, spectral characteristics, and spatial distribution of spontaneous BOLD fluctuations

(2014) Matthew Evan Magnuson et al.   NMR IN BIOMEDICINE

Sedation Agents Differentially Modulate Cortical and Subcortical Blood Oxygenation: Evidence from Ultra-High Field MRI at 17.2 T

(2014) Lynn Uhrig et al.   PLoS One

Large-scale topology and the default mode network in the mouse connectome

(2014) James M. Stafford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of neuroimaging in drug development

(2014) Bikash Medhi et al.   REVIEWS IN THE NEUROSCIENCES

Structure-Guided Transformation of Channelrhodopsin into a Light-Activated Chloride Channel

(2014) A. Berndt et al.   SCIENCE

Dysfunctional dopaminergic neurotransmission in asocial BTBR mice

(2014) M Squillace et al.   Translational Psychiatry

Optogenetic drive of neocortical pyramidal neurons generates fMRI signals that are correlated with spiking activity

(2013) I. Kahn et al.   BRAIN RESEARCH

DREADDs: novel tools for drug discovery and development

(2013) Hyeong-Min Lee et al.   DRUG DISCOVERY TODAY

MRI study of cerebral, retinal and choroidal blood flow responses to acute hypertension

(2013) Guang Li et al.   EXPERIMENTAL EYE RESEARCH

Large-Scale Brain Networks in the Awake, Truly Resting Marmoset Monkey

(2013) A. M. Belcher et al.   JOURNAL OF NEUROSCIENCE

Different anesthesia regimes modulate the functional connectivity outcome in mice

(2013) Elisabeth Jonckers et al.   MAGNETIC RESONANCE IN MEDICINE

The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism

(2013) A Di Martino et al.   MOLECULAR PSYCHIATRY

ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation

(2013) John Y Lin et al.   NATURE NEUROSCIENCE

Power failure: why small sample size undermines the reliability of neuroscience

(2013) Katherine S. Button et al.   NATURE REVIEWS NEUROSCIENCE

Functional MRI to assess alterations of functional networks in response to pharmacological or genetic manipulations of the serotonergic system in mice

(2013) Florence Razoux et al.   NEUROIMAGE

Mapping thalamocortical networks in rat brain using resting-state functional connectivity

(2013) Zhifeng Liang et al.   NEUROIMAGE

A receptor-based model for dopamine-induced fMRI signal

(2013) Joseph B. Mandeville et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

Resting-state fMRI confounds and cleanup

(2013) Kevin Murphy et al.   NEUROIMAGE

Dynamic functional connectivity: Promise, issues, and interpretations

(2013) R. Matthew Hutchison et al.   NEUROIMAGE

Methods to detect, characterize, and remove motion artifact in resting state fMRI

(2013) Jonathan D. Power et al.   NEUROIMAGE

Distributed BOLD and CBV-weighted resting-state networks in the mouse brain

(2013) Francesco Sforazzini et al.   NEUROIMAGE

Resting state functional connectivity: Its physiological basis and application in neuropharmacology

(2013) Hanbing Lu et al.   NEUROPHARMACOLOGY

A Gαs DREADD Mouse for Selective Modulation of cAMP Production in Striatopallidal Neurons

(2013) Martilias S Farrell et al.   NEUROPSYCHOPHARMACOLOGY

Reliability and spatial specificity of rat brain sensorimotor functional connectivity networks are superior under sedation compared with general anesthesia

(2013) Daniel Kalthoff et al.   NMR IN BIOMEDICINE

Functional and Structural Neural Network Characterization of Serotonin Transporter Knockout Rats

(2013) Kajo van der Marel et al.   PLoS One

Water diffusion in brain cortex closely tracks underlying neuronal activity

(2013) T. Tsurugizawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Time-varying functional network information extracted from brief instances of spontaneous brain activity

(2013) Xiao Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-term channelrhodopsin-2 (ChR2) expression can induce abnormal axonal morphology and targeting in cerebral cortex

(2013) Toshio Miyashita et al.   Frontiers in Neural Circuits

Toward open sharing of task-based fMRI data: the OpenfMRI project

(2013) Russell A. Poldrack et al.   Frontiers in Neuroinformatics

Cytoarchitecture of mouse and rat cingulate cortex with human homologies

(2012) Brent A. Vogt et al.   Brain Structure & Function

The Change of Functional Connectivity Specificity in Rats Under Various Anesthesia Levels and its Neural Origin

(2012) Xiao Liu et al.   BRAIN TOPOGRAPHY

Tracking Whole-Brain Connectivity Dynamics in the Resting State

(2012) Elena A. Allen et al.   CEREBRAL CORTEX

Endogenous opioid–dopamine neurotransmission underlie negative CBV fMRI signals

(2012) Yen-Yu I. Shih et al.   EXPERIMENTAL NEUROLOGY

Neuromapping techniques in drug discovery: pharmacological MRI for the assessment of novel antipsychotics

(2012) Angelo Bifone et al.   Expert Opinion on Drug Discovery

Periods of rest in fMRI contain individual spontaneous events which are related to slowly fluctuating spontaneous activity

(2012) Natalia Petridou et al.   HUMAN BRAIN MAPPING

Resting-state networks show dynamic functional connectivity in awake humans and anesthetized macaques

(2012) R. Matthew Hutchison et al.   HUMAN BRAIN MAPPING

A rat brain MRI template with digital stereotaxic atlas of fine anatomical delineations in paxinos space and its automated application in voxel-wise analysis

(2012) Binbin Nie et al.   HUMAN BRAIN MAPPING

Biophysical and Physiological Origins of Blood Oxygenation Level-Dependent fMRI Signals

(2012) Seong-Gi Kim et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Extent of Bilateral Neuronal Network Reorganization and Functional Recovery in Relation to Stroke Severity

(2012) M. P. A. van Meer et al.   JOURNAL OF NEUROSCIENCE

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing

(2012) Linda Madisen et al.   NATURE NEUROSCIENCE

Using manganese-enhanced MRI to understand BOLD

(2012) Afonso C. Silva   NEUROIMAGE

Spin-echo fMRI: The poor relation?

(2012) David G. Norris   NEUROIMAGE

IRON fMRI measurements of CBV and implications for BOLD signal

(2012) Joseph B. Mandeville   NEUROIMAGE

Pharmacologic magnetic resonance imaging (phMRI): Imaging drug action in the brain

(2012) Bruce G. Jenkins   NEUROIMAGE

The secret lives of experiments: Methods reporting in the fMRI literature

(2012) Joshua Carp   NEUROIMAGE

Impact of hemodynamic effects on diffusion-weighted fMRI signals

(2012) Umesh S. Rudrapatna et al.   NEUROIMAGE

The future of the human connectome

(2012) D.C. Van Essen et al.   NEUROIMAGE

fMRI response to blue light delivery in the naïve brain: Implications for combined optogenetic fMRI studies

(2012) Isabel N. Christie et al.   NEUROIMAGE

A Neural Switch for Active and Passive Fear

(2012) Alessandro Gozzi et al.   NEURON

Optogenetic inhibition of Purkinje cell activity reveals cerebellar control of blood pressure during postural alterations in anesthetized rats

(2012) T. Tsubota et al.   NEUROSCIENCE

MRI assessment of amplitude of low-frequency fluctuation in rat brains with acute cerebral ischemic stroke

(2012) Qun-li Yao et al.   NEUROSCIENCE LETTERS

Opto-fMRI analysis for exploring the neuronal connectivity of the hippocampal formation in rats

(2012) Yoshifumi Abe et al.   NEUROSCIENCE RESEARCH

Effects of Anesthetic Agents on Brain Blood Oxygenation Level Revealed with Ultra-High Field MRI

(2012) Luisa Ciobanu et al.   PLoS One

Hemodynamic Responses Evoked by Neuronal Stimulation via Channelrhodopsin-2 Can Be Independent of Intracortical Glutamatergic Synaptic Transmission

(2012) Nadia A. Scott et al.   PLoS One

Rat brains also have a default mode network

(2012) H. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Monkey in the middle: why non-human primates are needed to bridge the gap in resting-state investigations

(2012) R. Matthew Hutchison et al.   Frontiers in Neuroanatomy

The INIA19 Template and NeuroMaps Atlas for Primate Brain Image Parcellation and Spatial Normalization

(2012) Torsten Rohlfing et al.   Frontiers in Neuroinformatics

The Use of Pharmacological-challenge fMRI in Pre-clinical Research: Application to the 5-HT System

(2012) Anne Klomp et al.   Jove-Journal of Visualized Experiments

The Alzheimer’s Disease Neuroimaging Initiative: A review of papers published since its inception

(2011) Michael W. Weiner et al.   Alzheimers & Dementia

The Development and Application of Optogenetics

(2011) Lief Fenno et al.   Annual Review of Neuroscience

Cortical Parcellations of the Macaque Monkey Analyzed on Surface-Based Atlases

(2011) D. C. Van Essen et al.   CEREBRAL CORTEX

Uncovering Intrinsic Connectional Architecture of Functional Networks in Awake Rat Brain

(2011) Z. Liang et al.   JOURNAL OF NEUROSCIENCE

Characterization of the Functional MRI Response Temporal Linearity via Optical Control of Neocortical Pyramidal Neurons

(2011) I. Kahn et al.   JOURNAL OF NEUROSCIENCE

Default Mode of Brain Function in Monkeys

(2011) D. Mantini et al.   JOURNAL OF NEUROSCIENCE

A robust experimental protocol for pharmacological fMRI in rats and mice

(2011) Livia Ferrari et al.   JOURNAL OF NEUROSCIENCE METHODS

Pharmacological MRI of the choroid and retina: Blood flow and BOLD responses during nitroprusside infusion

(2011) Yen-Yu I. Shih et al.   MAGNETIC RESONANCE IN MEDICINE

Differential response to specific 5-Ht(7) versus whole-serotonergic drugs in rat forebrains: A phMRI study

(2011) Rossella Canese et al.   NEUROIMAGE

FMRI using balanced steady-state free precession (SSFP)

(2011) Karla L. Miller   NEUROIMAGE

Differentiating BOLD and non-BOLD signals in fMRI time series using multi-echo EPI

(2011) Prantik Kundu et al.   NEUROIMAGE

Recombinase-Driver Rat Lines: Tools, Techniques, and Optogenetic Application to Dopamine-Mediated Reinforcement

(2011) Ilana B. Witten et al.   NEURON

Optogenetics in Neural Systems

(2011) Ofer Yizhar et al.   NEURON

Functional Connectivity fMRI of the Rodent Brain: Comparison of Functional Connectivity Networks in Rat and Mouse

(2011) Elisabeth Jonckers et al.   PLoS One

Impaired Respiratory and Body Temperature Control Upon Acute Serotonergic Neuron Inhibition

(2011) R. S. Ray et al.   SCIENCE

Optogenetic tools for analyzing the neural circuits of behavior

(2011) Jacob G. Bernstein et al.   TRENDS IN COGNITIVE SCIENCES

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(2011) Pedro Antonio Valdés-Hernández   Frontiers in Neuroinformatics

Neural Origin of Spontaneous Hemodynamic Fluctuations in Rats under Burst-Suppression Anesthesia Condition

(2010) X. Liu et al.   CEREBRAL CORTEX

General Anesthetic Actions on GABAA Receptors

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A user's guide to channelrhodopsin variants: features, limitations and future developments

(2010) John Y. Lin   EXPERIMENTAL PHYSIOLOGY

The Influence of Carbon Dioxide on Brain Activity and Metabolism in Conscious Humans

(2010) Feng Xu et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Functional Networks in the Anesthetized Rat Brain Revealed by Independent Component Analysis of Resting-State fMRI

(2010) R. Matthew Hutchison et al.   JOURNAL OF NEUROPHYSIOLOGY

Mapping brain networks in awake mice using combined optical neural control and fMRI

(2010) M. Desai et al.   JOURNAL OF NEUROPHYSIOLOGY

Recovery of Sensorimotor Function after Experimental Stroke Correlates with Restoration of Resting-State Interhemispheric Functional Connectivity

(2010) M. P. A. van Meer et al.   JOURNAL OF NEUROSCIENCE

Comparison of α-chloralose, medetomidine and isoflurane anesthesia for functional connectivity mapping in the rat

(2010) Kathleen A. Williams et al.   MAGNETIC RESONANCE IMAGING

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(2010) Lisa A Gunaydin et al.   NATURE NEUROSCIENCE

Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures

(2010) Feng Zhang et al.   Nature Protocols

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(2010) Tae Kim et al.   NEUROIMAGE

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Increased blood oxygen level-dependent (BOLD) sensitivity in the mouse somatosensory cortex during electrical forepaw stimulation using a cryogenic radiofrequency probe

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Characterization of Engineered Channelrhodopsin Variants with Improved Properties and Kinetics

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Greater than the sum of its parts: a review of studies combining structural connectivity and resting-state functional connectivity

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Cortical Hubs Revealed by Intrinsic Functional Connectivity: Mapping, Assessment of Stability, and Relation to Alzheimer's Disease

(2009) R. L. Buckner et al.   JOURNAL OF NEUROSCIENCE

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(2009) André Berndt et al.   NATURE NEUROSCIENCE

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(2009) R. C. Petersen et al.   NEUROLOGY

Remote Control of Neuronal Activity in Transgenic Mice Expressing Evolved G Protein-Coupled Receptors

(2009) Georgia M. Alexander et al.   NEURON

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(2009) N. Filippini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

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(2008) D. Zimmermann et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

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(2008) D. Atasoy et al.   JOURNAL OF NEUROSCIENCE

An improved approach to detection of amplitude of low-frequency fluctuation (ALFF) for resting-state fMRI: Fractional ALFF

(2008) Qi-Hong Zou et al.   JOURNAL OF NEUROSCIENCE METHODS

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(2008) Karla L. Miller et al.   MAGNETIC RESONANCE IN MEDICINE

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(2008) Christopher P. Pawela et al.   MAGNETIC RESONANCE IN MEDICINE

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(2008) Weiying Dai et al.   MAGNETIC RESONANCE IN MEDICINE

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(2008) Julia Knabl et al.   NATURE

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(2008) Feng Zhang et al.   NATURE NEUROSCIENCE

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(2008) Nicholas P. Franks   NATURE REVIEWS NEUROSCIENCE

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(2008) A.E. Dorr et al.   NEUROIMAGE

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(2008) Donald G. McLaren et al.   NEUROIMAGE

Pharmacological MRI in animal models: A useful tool for 5-HT research?

(2008) Chris Martin et al.   NEUROPHARMACOLOGY

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(2007) Daniel Huber et al.   NATURE

Pharmacological MRI combined with electrophysiology in non-human primates: Effects of Lidocaine on primary visual cortex

(2007) Alexander Rauch et al.   NEUROIMAGE

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