Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation
出版年份 2019 全文链接
标题
Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation
作者
关键词
-
出版物
Frontiers in Microbiology
Volume 10, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2019-12-05
DOI
10.3389/fmicb.2019.02801
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Acetic acid bacteria in fermented foods and beverages
- (2018) Jonas De Roos et al. CURRENT OPINION IN BIOTECHNOLOGY
- KBase: The United States Department of Energy Systems Biology Knowledgebase
- (2018) Adam P Arkin et al. NATURE BIOTECHNOLOGY
- Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
- (2018) Daniel Machado et al. NUCLEIC ACIDS RESEARCH
- PubChem 2019 update: improved access to chemical data
- (2018) Sunghwan Kim et al. NUCLEIC ACIDS RESEARCH
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production
- (2017) Heng Zhang et al. Scientific Reports
- Molecular identification and physiological characterization of yeasts, lactic acid bacteria and acetic acid bacteria isolated from heap and box cocoa bean fermentations in West Africa
- (2016) Simonetta Visintin et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- The cocoa bean fermentation process: from ecosystem analysis to starter culture development
- (2016) L. De Vuyst et al. JOURNAL OF APPLIED MICROBIOLOGY
- Constraint-based stoichiometric modelling from single organisms to microbial communities
- (2016) Willi Gottstein et al. Journal of the Royal Society Interface
- High-throughput identification of the microbial biodiversity of cocoa bean fermentation by MALDI-TOF MS
- (2016) S. Miescher Schwenninger et al. LETTERS IN APPLIED MICROBIOLOGY
- proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes
- (2016) Daniel R. Mende et al. NUCLEIC ACIDS RESEARCH
- Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
- (2016) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- NCBI prokaryotic genome annotation pipeline
- (2016) Tatiana Tatusova et al. NUCLEIC ACIDS RESEARCH
- TransportDB 2.0: a database for exploring membrane transporters in sequenced genomes from all domains of life
- (2016) Liam D. H. Elbourne et al. NUCLEIC ACIDS RESEARCH
- KEGG: new perspectives on genomes, pathways, diseases and drugs
- (2016) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology
- (2015) Peter D. Karp et al. BRIEFINGS IN BIOINFORMATICS
- MetaNetX/MNXref – reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks
- (2015) Sébastien Moretti et al. NUCLEIC ACIDS RESEARCH
- ChEBI in 2016: Improved services and an expanding collection of metabolites
- (2015) Janna Hastings et al. NUCLEIC ACIDS RESEARCH
- The Transporter Classification Database (TCDB): recent advances
- (2015) Milton H. Saier et al. NUCLEIC ACIDS RESEARCH
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2015) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
- (2015) Zachary A. King et al. PLoS Computational Biology
- Biosynthesis and Export of Bacterial Lipopolysaccharides
- (2014) Chris Whitfield et al. Annual Review of Biochemistry
- The Key to Acetate: Metabolic Fluxes of Acetic Acid Bacteria under Cocoa Pulp Fermentation-Simulating Conditions
- (2014) Philipp Adler et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Oxidation of Metabolites Highlights the Microbial Interactions and Role ofAcetobacter pasteurianusduring Cocoa Bean Fermentation
- (2014) Frédéric Moens et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Replacement of a terminal cytochrome c oxidase by ubiquinol oxidase during the evolution of acetic acid bacteria
- (2014) Minenosuke Matsutani et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Genome-scale reconstruction of a metabolic network for Gluconobacter oxydans 621H
- (2014) Xinsen Wu et al. BIOSYSTEMS
- Fatty acid synthesis in Escherichia coli and its applications towards the production of fatty acid based biofuels
- (2014) Helge Janßen et al. Biotechnology for Biofuels
- Comparative genomics of nucleotide metabolism: a tour to the past of the three cellular domains of life
- (2014) Dagoberto Armenta-Medina et al. BMC GENOMICS
- MediaDB: A Database of Microbial Growth Conditions in Defined Media
- (2014) Matthew A. Richards et al. PLoS One
- SATP (YaaH), a succinate–acetate transporter protein inEscherichia coli
- (2013) Joana Sá-Pessoa et al. BIOCHEMICAL JOURNAL
- MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks
- (2013) M. Ganter et al. BIOINFORMATICS
- Complete genome sequence and comparative analysis of Acetobacter pasteurianus 386B, a strain well-adapted to the cocoa bean fermentation ecosystem
- (2013) Koen Illeghems et al. BMC GENOMICS
- COBRApy: COnstraints-Based Reconstruction and Analysis for Python
- (2013) Ali Ebrahim et al. BMC Systems Biology
- Hanseniaspora opuntiae, Saccharomyces cerevisiae, Lactobacillus fermentum, and Acetobacter pasteurianus predominate during well-performed Malaysian cocoa bean box fermentations, underlining the importance of these microbial species for a successful cocoa bean fermentation process
- (2013) Zoi Papalexandratou et al. FOOD MICROBIOLOGY
- Acetic Acid Bacteria: Physiology and Carbon Sources Oxidation
- (2013) Dhouha Mamlouk et al. INDIAN JOURNAL OF MICROBIOLOGY
- Cyanide-insensitive quinol oxidase (CIO) from Gluconobacter oxydans is a unique terminal oxidase subfamily of cytochrome bd
- (2013) Hiroshi Miura et al. JOURNAL OF BIOCHEMISTRY
- Nitrogen Assimilation in Escherichia coli: Putting Molecular Data into a Systems Perspective
- (2013) W. C. van Heeswijk et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- Detailed Analysis of the Microbial Population in Malaysian Spontaneous Cocoa Pulp Fermentations Reveals a Core and Variable Microbiota
- (2013) Esther Meersman et al. PLoS One
- Bacterial lipids: Metabolism and membrane homeostasis
- (2013) Joshua B. Parsons et al. PROGRESS IN LIPID RESEARCH
- Phosphatidylcholine biosynthesis and function in bacteria
- (2012) Otto Geiger et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS
- Reconciliation of metabolites and biochemical reactions for metabolic networks
- (2012) T. Bernard et al. BRIEFINGS IN BIOINFORMATICS
- Allosteric regulation in Acetohydroxyacid Synthases (AHASs) – Different structures and kinetic behavior in isozymes in the same organisms
- (2011) Ze’ev Barak et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
- A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011
- (2011) J. D. Orth et al. Molecular Systems Biology
- From the regulation of peptidoglycan synthesis to bacterial growth and morphology
- (2011) Athanasios Typas et al. NATURE REVIEWS MICROBIOLOGY
- IMG: the integrated microbial genomes database and comparative analysis system
- (2011) V. M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- Kinetic Analysis of Strains of Lactic Acid Bacteria and Acetic Acid Bacteria in Cocoa Pulp Simulation Media toward Development of a Starter Culture for Cocoa Bean Fermentation
- (2010) T. Lefeber et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- An Alternative Route for UDP-Diacylglucosamine Hydrolysis in Bacterial Lipid A Biosynthesis
- (2010) Louis E. Metzger et al. BIOCHEMISTRY
- Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase
- (2010) Kaspar Valgepea et al. BMC Systems Biology
- Computational methods for metabolic reconstruction
- (2010) Esa Pitkänen et al. CURRENT OPINION IN BIOTECHNOLOGY
- Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks
- (2010) Eytan Ruppin et al. CURRENT OPINION IN BIOTECHNOLOGY
- The biomass objective function
- (2010) Adam M Feist et al. CURRENT OPINION IN MICROBIOLOGY
- Dynamics and species diversity of communities of lactic acid bacteria and acetic acid bacteria during spontaneous cocoa bean fermentation in vessels
- (2010) Timothy Lefeber et al. FOOD MICROBIOLOGY
- Transcriptome response to different carbon sources in Acetobacter aceti
- (2010) K. Sakurai et al. MICROBIOLOGY-SGM
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- A protocol for generating a high-quality genome-scale metabolic reconstruction
- (2010) Ines Thiele et al. Nature Protocols
- Involvement of PlsX and the acyl-phosphate dependent sn-glycerol-3-phosphate acyltransferase PlsY in the initial stage of glycerolipid synthesis in Bacillus subtilis
- (2009) Yoshinori Hara et al. GENES & GENETIC SYSTEMS
- Escherichia coli Unsaturated Fatty Acid Synthesis
- (2009) Youjun Feng et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- LibSBML: an API Library for SBML
- (2008) B. J. Bornstein et al. BIOINFORMATICS
- A Novel 3-Dehydroquinate Dehydratase Catalyzing Extracellular Formation of 3-Dehydroshikimate by Oxidative Fermentation ofGluconobacter oxydansIFO 3244
- (2008) Osao ADACHI et al. BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
- Acetobacter fabarum sp. nov., an acetic acid bacterium from a Ghanaian cocoa bean heap fermentation
- (2008) I. Cleenwerck et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- A Specialized Citric Acid Cycle Requiring Succinyl-Coenzyme A (CoA):Acetate CoA-Transferase (AarC) Confers Acetic Acid Resistance on the Acidophile Acetobacter aceti
- (2008) E. A. Mullins et al. JOURNAL OF BACTERIOLOGY
- ExplorEnz: the primary source of the IUBMB enzyme list
- (2008) A. G. McDonald et al. NUCLEIC ACIDS RESEARCH
- Crystal structures ofMycobacterium tuberculosisS-adenosyl-L-homocysteine hydrolase in ternary complex with substrate and inhibitors
- (2008) Manchi C.M. Reddy et al. PROTEIN SCIENCE
- Comparative genomics and functional annotation of bacterial transporters
- (2007) Mikhail S. Gelfand et al. Physics of Life Reviews
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now