Nitrogen Assimilation in Escherichia coli: Putting Molecular Data into a Systems Perspective
出版年份 2013 全文链接
标题
Nitrogen Assimilation in Escherichia coli: Putting Molecular Data into a Systems Perspective
作者
关键词
-
出版物
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
Volume 77, Issue 4, Pages 628-695
出版商
American Society for Microbiology
发表日期
2013-12-02
DOI
10.1128/mmbr.00025-13
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Mechanistic Explanations and Models in Molecular Systems Biology
- (2013) Fred C. Boogerd et al. Foundations of Science
- Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli
- (2012) Tom Kormelink et al. BMC GENOMICS
- Catalysis Uncoupling in a Glutamine Amidotransferase Bienzyme by Unblocking the Glutaminase Active Site
- (2012) Felix List et al. CHEMISTRY & BIOLOGY
- Cell Size Control in Bacteria
- (2012) An-Chun Chien et al. CURRENT BIOLOGY
- Whyin vivomay not equalin vitro- new effectors revealed by measurement of enzymatic activities under the samein vivo-like assay conditions
- (2012) Rodolfo García-Contreras et al. FEBS Journal
- Ammonium Transporters Achieve Charge Transfer by Fragmenting Their Substrate
- (2012) Shihao Wang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The phosphotransferase protein EIIANtrmodulates the phosphate starvation response through interaction with histidine kinase PhoR inEscherichia coli
- (2012) Denise Lüttmann et al. MOLECULAR MICROBIOLOGY
- Need-based activation of ammonium uptake in Escherichia coli
- (2012) Minsu Kim et al. Molecular Systems Biology
- Computing life: Add logos to biology and bios to physics
- (2012) Alexey Kolodkin et al. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
- Comment on "Load-Induced Modulation of Signal Transduction Networks": Reconciling Ultrasensitivity with Bifunctionality?
- (2012) R. Straube Science Signaling
- Overcoming Fluctuation and Leakage Problems in the Quantification of Intracellular 2-Oxoglutarate Levels in Escherichia coli
- (2011) Dalai Yan et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Biological Design Principles of Complex Feedback Modules in theE. coliAmmonia Assimilation System
- (2011) Koichi Masaki et al. ARTIFICIAL LIFE
- Dephosphorylated NPr of the nitrogen PTS regulates lipid A biosynthesis by direct interaction with LpxD
- (2011) Hyun-Jin Kim et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- The role of effector molecules in signal transduction by PIIproteins
- (2011) Martha Radchenko et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- A Source of Ultrasensitivity in the Glutamine Response of the Bicyclic Cascade System Controlling Glutamine Synthetase Adenylylation State and Activity inEscherichia coli
- (2011) Peng Jiang et al. BIOCHEMISTRY
- Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior
- (2011) Christof Francke et al. BMC GENOMICS
- Recognition of DNA by the Helix-Turn-Helix Global Regulatory Protein Lrp Is Modulated by the Amino Terminus
- (2011) B. R. Hart et al. JOURNAL OF BACTERIOLOGY
- Role of ArgP (IciA) in Lysine-Mediated Repression in Escherichia coli
- (2011) C. N. Marbaniang et al. JOURNAL OF BACTERIOLOGY
- Characteristic Phenotypes Associated with ptsN-Null Mutants in Escherichia coli K-12 Are Absent in Strains with Functional ilvG
- (2011) M. L. Reaves et al. JOURNAL OF BACTERIOLOGY
- Unnecessary Signaling: Poorly Named?
- (2011) A. J. Ninfa JOURNAL OF BACTERIOLOGY
- Identification of ArgP and Lrp as Transcriptional Regulators of lysP, the Gene Encoding the Specific Lysine Permease of Escherichia coli
- (2011) J. Ruiz et al. JOURNAL OF BACTERIOLOGY
- Hydrogen-Stimulated Carbon Acquisition and Conservation in Salmonella enterica Serovar Typhimurium
- (2011) R. Lamichhane-Khadka et al. JOURNAL OF BACTERIOLOGY
- Transcriptional regulation of main metabolic pathways of cyoA, cydB, fnr, and fur gene knockout Escherichia coli in C-limited and N-limited aerobic continuous cultures
- (2011) Rahul Kumar et al. Microbial Cell Factories
- Robust Control of Nitrogen Assimilation by a Bifunctional Enzyme in E. coli
- (2011) Yuval Hart et al. MOLECULAR CELL
- Escherichia coli Rep DNA helicase and error-prone DNA polymerase IV interact physically and functionally
- (2011) Thomas E. Sladewski et al. MOLECULAR MICROBIOLOGY
- α-ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition
- (2011) Christopher D Doucette et al. Nature Chemical Biology
- The Role of Glutamate Dehydrogenase in Mammalian Ammonia Metabolism
- (2011) Cleanthe Spanaki et al. NEUROTOXICITY RESEARCH
- Flux Balance Analysis of Ammonia Assimilation Network in E. coli Predicts Preferred Regulation Point
- (2011) Lu Wang et al. PLoS One
- Novel Roles of cAMP Receptor Protein (CRP) in Regulation of Transport and Metabolism of Carbon Sources
- (2011) Tomohiro Shimada et al. PLoS One
- How Molecular Competition Influences Fluxes in Gene Expression Networks
- (2011) Dirk De Vos et al. PLoS One
- Periplasmic vestibule plays an important role for solute recruitment, selectivity, and gating in the Rh/Amt/MEP superfamily
- (2011) U. Akgun et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The pivotal twin histidines and aromatic triad of theEscherichia coliammonium channel AmtB can be replaced
- (2011) Jason A. Hall et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Load-Induced Modulation of Signal Transduction Networks
- (2011) P. Jiang et al. Science Signaling
- Systems biochemistry in practice: experimenting with modelling and understanding, with regulation and control
- (2010) Hans V. Westerhoff et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Why does yeast ferment? A flux balance analysis study
- (2010) Evangelos Simeonidis et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Ligand-Free Open−Closed Transitions of Periplasmic Binding Proteins: The Case of Glutamine-Binding Protein
- (2010) Guillermo A. Bermejo et al. BIOCHEMISTRY
- Fast sampling for quantitative microbial metabolomics
- (2010) Walter M van Gulik CURRENT OPINION IN BIOTECHNOLOGY
- Metabolomics in systems microbiology
- (2010) Marshall Louis Reaves et al. CURRENT OPINION IN BIOTECHNOLOGY
- AmtB-mediated NH3transport in prokaryotes must be active and as a consequence regulation of transport by GlnK is mandatory to limit futile cycling of NH4+/NH3
- (2010) Fred C. Boogerd et al. FEBS LETTERS
- A NAC for Regulating Metabolism: the Nitrogen Assimilation Control Protein (NAC) from Klebsiella pneumoniae
- (2010) R. A. Bender JOURNAL OF BACTERIOLOGY
- The LysR-Type Nitrogen Assimilation Control Protein Forms Complexes with Both Long and Short DNA Binding Sites in the Absence of Coeffectors
- (2010) C. J. Rosario et al. JOURNAL OF BACTERIOLOGY
- Expanded Role for the Nitrogen Assimilation Control Protein in the Response of Klebsiella pneumoniae to Nitrogen Stress
- (2010) R. L. Frisch et al. JOURNAL OF BACTERIOLOGY
- Mutagenesis and Functional Characterization of the Four Domains of GlnD, a Bifunctional Nitrogen Sensor Protein
- (2010) Y. Zhang et al. JOURNAL OF BACTERIOLOGY
- Control of AmtB-GlnK Complex Formation by Intracellular Levels of ATP, ADP, and 2-Oxoglutarate
- (2010) Martha V. Radchenko et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Metabolic and Transcriptional Response to Cofactor Perturbations in Escherichia coli
- (2010) Anders K. Holm et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A New PII Protein Structure Identifies the 2-Oxoglutarate Binding Site
- (2010) Daphne Truan et al. JOURNAL OF MOLECULAR BIOLOGY
- Reversible Adenylylation of Glutamine Synthetase Is Dynamically Counterbalanced during Steady-State Growth of Escherichia coli
- (2010) Hiroyuki Okano et al. JOURNAL OF MOLECULAR BIOLOGY
- Molecular Dynamics Simulations on the Mechanism of Transporting Methylamine and Ammonia by Ammonium Transporter AmtB
- (2010) Jinan Wang et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Substrate Recognition in theEscherichia coliAmmonia Channel AmtB: A QM/MM Investigation
- (2010) Thomas P. Nygaard et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Metabolic regulation of Escherichia coli and its gdhA, glnL, gltB, D mutants under different carbon and nitrogen limitations in the continuous culture
- (2010) Rahul Kumar et al. Microbial Cell Factories
- Structure of the bifunctional isocitrate dehydrogenase kinase/phosphatase
- (2010) Jimin Zheng et al. NATURE
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
- (2010) S. Gama-Castro et al. NUCLEIC ACIDS RESEARCH
- EcoCyc: a comprehensive database of Escherichia coli biology
- (2010) I. M. Keseler et al. NUCLEIC ACIDS RESEARCH
- Osmolytes Contribute to pH Homeostasis of Escherichia coli
- (2010) Ryan D. Kitko et al. PLoS One
- Signaling properties of a covalent modification cycle are altered by a downstream target
- (2010) A. C. Ventura et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Salmonella pathogenicity island 2 expression negatively controlled by EIIANtr-SsrB interaction is required for Salmonella virulence
- (2010) J. Choi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Extending the diffraction limit of protein crystals: The example of glutamine synthetase from Salmonella typhimurium in the presence of its cofactor ATP
- (2010) Shwu Huey Liaw et al. PROTEIN SCIENCE
- Acetylation of Metabolic Enzymes Coordinates Carbon Source Utilization and Metabolic Flux
- (2010) Q. Wang et al. SCIENCE
- Regulation of Cellular Metabolism by Protein Lysine Acetylation
- (2010) S. Zhao et al. SCIENCE
- Transport mechanisms in the ammonium transporter family
- (2010) G. Lamoureux et al. TRANSFUSION CLINIQUE ET BIOLOGIQUE
- Regulatory roles of the bacterial nitrogen-related phosphotransferase system
- (2010) Katharina Pflüger-Grau et al. TRENDS IN MICROBIOLOGY
- Achieving Optimal Growth through Product Feedback Inhibition in Metabolism
- (2010) Sidhartha Goyal et al. PLoS Computational Biology
- Quantitative Evaluation of Intracellular Metabolite Extraction Techniques for Yeast Metabolomics
- (2009) André B. Canelas et al. ANALYTICAL CHEMISTRY
- α-Ketoglutarate Controls the Ability of theEscherichia coliPII Signal Transduction Protein To Regulate the Activities of NRII (NtrB) but Does Not Control the Binding of PII to NRII
- (2009) Peng Jiang et al. BIOCHEMISTRY
- Sensation and Signaling of α-Ketoglutarate and Adenylylate Energy Charge by theEscherichia coliPII Signal Transduction Protein Require Cooperation of the Three Ligand-Binding Sites within the PII Trimer
- (2009) Peng Jiang et al. BIOCHEMISTRY
- The pivotal regulator GlnB ofEscherichia coliis engaged in subtle and context-dependent control
- (2009) Wally C. van Heeswijk et al. FEBS Journal
- Systems Biology: The elements and principles of Life
- (2009) Hans V. Westerhoff et al. FEBS LETTERS
- Genetic Evidence for an Essential Oscillation of Transmembrane-Spanning Segment 5 in the Escherichia coli Ammonium Channel AmtB
- (2009) William B. Inwood et al. GENETICS
- Epistatic Effects of the Protease/Chaperone HflB on Some Damaged Forms of the Escherichia coli Ammonium Channel AmtB
- (2009) William B. Inwood et al. GENETICS
- Modelling nitrogen assimilation of Escherichia coli at low ammonium concentration
- (2009) Hongwu Ma et al. JOURNAL OF BIOTECHNOLOGY
- Structure of the Adenylylation Domain of E. coli Glutamine Synthetase Adenylyl Transferase: Evidence for Gene Duplication and Evolution of a New Active Site
- (2009) Yibin Xu et al. JOURNAL OF MOLECULAR BIOLOGY
- The PII Superfamily Revised: A Novel Group and Evolutionary Insights
- (2009) Fernando Hayashi Sant’Anna et al. JOURNAL OF MOLECULAR EVOLUTION
- Functional Role of Asp160 and the Deprotonation Mechanism of Ammonium in theEscherichia coliAmmonia Channel Protein AmtB
- (2009) Yuchun Lin et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Stimulation of the potassium sensor KdpD kinase activity by interaction with the phosphotransferase protein IIANtrinEscherichia coli
- (2009) Denise Lüttmann et al. MOLECULAR MICROBIOLOGY
- Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli
- (2009) Jie Yuan et al. Molecular Systems Biology
- Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
- (2009) Bryson D Bennett et al. Nature Chemical Biology
- Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli
- (2009) Alfredo Mendoza-Vargas et al. PLoS One
- Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
- (2009) C. Choudhary et al. SCIENCE
- Development and application of a differential method for reliable metabolome analysis in Escherichia coli
- (2008) Hilal Taymaz-Nikerel et al. ANALYTICAL BIOCHEMISTRY
- Global Metabolic Profiling ofEscherichia coliCultures: an Evaluation of Methods for Quenching and Extraction of Intracellular Metabolites
- (2008) Catherine L. Winder et al. ANALYTICAL CHEMISTRY
- Steady-State Kinetics and Mechanism of LpxD, theN-Acyltransferase of Lipid A Biosynthesis†
- (2008) Craig M. Bartling et al. BIOCHEMISTRY
- Functional and Structural Characterization of Four Glutaminases from Escherichia coli and Bacillus subtilis†
- (2008) Greg Brown et al. BIOCHEMISTRY
- Reconstitution ofEscherichia coliGlutamine Synthetase Adenylyltransferase from N-Terminal and C-Terminal Fragments of the Enzyme†
- (2008) Peng Jiang et al. BIOCHEMISTRY
- Apparent negative co-operativity and substrate inhibition in overexpressed glutamate dehydrogenase from Escherichia coli
- (2008) Michael A. Sharkey et al. FEMS MICROBIOLOGY LETTERS
- Requirements for the phosphorylation of theEscherichia coliEIIANtrproteinin vivo
- (2008) Björn Zimmer et al. FEMS MICROBIOLOGY LETTERS
- Structure–function studies of glutamate synthases: A class of self-regulated iron-sulfur flavoenzymes essential for nitrogen assimilation
- (2008) Maria Antonietta Vanoni et al. IUBMB LIFE
- The ArgP Protein Stimulates the Klebsiella pneumoniae gdhA Promoter in a Lysine-Sensitive Manner
- (2008) T. J. Goss JOURNAL OF BACTERIOLOGY
- The Crp-Activated Small Noncoding Regulatory RNA CyaR (RyeE) Links Nutritional Status to Group Behavior
- (2008) N. De Lay et al. JOURNAL OF BACTERIOLOGY
- Distinct Transport Mechanisms in Yeast Ammonium Transport/Sensor Proteins of the Mep/Amt/Rh Family and Impact on Filamentation
- (2008) Mélanie Boeckstaens et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Robustness in Escherichia coli Glutamate and Glutamine Synthesis Studied by a Kinetic Model
- (2008) Aníbal Lodeiro et al. JOURNAL OF BIOLOGICAL PHYSICS
- Systems biology towards life in silico: mathematics of the control of living cells
- (2008) Hans V. Westerhoff et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Structure, Function, and Evolution of Bacterial ATP-Binding Cassette Systems
- (2008) A. L. Davidson et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
- (2008) S. E. Maddocks et al. MICROBIOLOGY-SGM
- Lysine Acetylation Is a Highly Abundant and Evolutionarily Conserved Modification inEscherichia Coli
- (2008) Junmei Zhang et al. MOLECULAR & CELLULAR PROTEOMICS
- Control of RpoS in global gene expression of Escherichia coli in minimal media
- (2008) Tao Dong et al. MOLECULAR GENETICS AND GENOMICS
- Kinetic flux profiling for quantitation of cellular metabolic fluxes
- (2008) Jie Yuan et al. Nature Protocols
- The Extracytoplasmic Stress Factor, σE, Is Required to Maintain Cell Envelope Integrity in Escherichia coli
- (2008) Jennifer D. Hayden et al. PLoS One
- Substrate binding, deprotonation, and selectivity at the periplasmic entrance of theEscherichia coliammonia channel AmtB
- (2008) Arnaud Javelle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PII signal transducers: novel functional and structural insights
- (2008) Karl Forchhammer TRENDS IN MICROBIOLOGY
- Signalling control strength
- (2007) Hans V. Westerhoff JOURNAL OF THEORETICAL BIOLOGY
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