Coevolution with Bacteriophages Drives Genome-Wide Host Evolution and Constrains the Acquisition of Abiotic-Beneficial Mutations

Epistasis and Allele Specificity in the Emergence of a Stable Polymorphism in Escherichia coli

(2014) J. Plucain et al.   SCIENCE

Chromosomal DNA deletion confers phage resistance to Pseudomonas aeruginosa

(2014) Shuai Le et al.   Scientific Reports

Evolution of Pseudomonas aeruginosa Virulence as a Result of Phage Predation

(2013) Zeinab Hosseinidoust et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Selection on non-social traits limits the invasion of social cheats

(2012) Andrew D. Morgan et al.   ECOLOGY LETTERS

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Rapid diversification of coevolving marine Synechococcus and a virus

(2012) M. F. Marston et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antagonistic coevolution limits population persistence of a virus in a thermally deteriorating environment

(2011) Quan-Guo Zhang et al.   ECOLOGY LETTERS

Host-parasite coevolutionary arms races give way to fluctuating selection

(2011) Alex R. Hall et al.   ECOLOGY LETTERS

Co-evolution with lytic phage selects for the mucoid phenotype of Pseudomonas fluorescens SBW25

(2011) Pauline Deirdre Scanlan et al.   ISME Journal

Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population

(2011) A. I. Khan et al.   SCIENCE

Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation

(2011) H.-H. Chou et al.   SCIENCE

Running with the Red Queen: Host-Parasite Coevolution Selects for Biparental Sex

(2011) L. T. Morran et al.   SCIENCE

Ongoing Phenotypic and Genomic Changes in Experimental Coevolution of RNA Bacteriophage Qβ and Escherichia coli

(2011) Akiko Kashiwagi et al.   PLoS Genetics

GGDEF and EAL proteins play different roles in the control of Sinorhizobium meliloti growth, motility, exopolysaccharide production, and competitive nodulation on host alfalfa

(2010) Yiwen Wang et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Bacteria‐Phage Coevolution and the Emergence of Generalist Pathogens

(2010) Alex R. Hall et al.   AMERICAN NATURALIST

Genetic basis of infectivity evolution in a bacteriophage

(2010) PAULINE D. SCANLAN et al.   MOLECULAR ECOLOGY

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

The Phage Therapy Paradigm: Prêt-à-Porter or Sur-mesure?

(2010) Jean-Paul Pirnay et al.   PHARMACEUTICAL RESEARCH

Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis

(2009) B. M. Hall et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS