Interactions between plants and soil shaping the root microbiome under abiotic stress

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

Nitrogen- and phosphorus-starved Triticum aestivum show distinct belowground microbiome profiles

(2019) Antoine P. Pagé et al.   PLoS One

A plant perspective on nitrogen cycling in the rhizosphere

(2019) Delphine Moreau et al.   FUNCTIONAL ECOLOGY

Tackling Plant Phosphate Starvation by the Roots

(2019) Hanne Crombez et al.   DEVELOPMENTAL CELL

Tradeoffs among root morphology, exudation and mycorrhizal symbioses for phosphorus‐acquisition strategies of 16 crop species

(2019) Zhihui Wen et al.   NEW PHYTOLOGIST

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

(2019) Christine N. Shulse et al.   Cell Reports

Drought consistently alters the composition of soil fungal and bacterial communities in grasslands from two continents

(2018) Raúl Ochoa-Hueso et al.   GLOBAL CHANGE BIOLOGY

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

(2018) Ling Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decreasing soil microbial diversity is associated with decreasing microbial biomass under nitrogen addition

(2018) Chao Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of soil total microbial biomass and community compositions to rainfall reductions

(2018) Chengjie Ren et al.   SOIL BIOLOGY & BIOCHEMISTRY

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Design of synthetic bacterial communities for predictable plant phenotypes

(2018) Sur Herrera Paredes et al.   PLOS BIOLOGY

Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities

(2018) Vanessa N. Kavamura et al.   Frontiers in Microbiology

Drought Stress and Root-Associated Bacterial Communities

(2018) Dan Naylor et al.   Frontiers in Plant Science

Correction to: Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

(2018) Collin M. Timm et al.   mSystems

Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes

(2018) Joshua P. Schimel   Annual Review of Ecology Evolution and Systematics

Nitrogen Fixation in Cereals

(2018) Mónica Rosenblueth et al.   Frontiers in Microbiology

The Endophytic Bacterial Microbiota Associated with Sweet Sorghum (Sorghum bicolor) Is Modulated by the Application of Chemical N Fertilizer to the Field

(2018) Cintia Mareque et al.   International Journal of Genomics

Cultivar and phosphorus effects on switchgrass yield and rhizosphere microbial diversity

(2018) Anne Sawyer et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana

(2018) Izabela Fabiańska et al.   NEW PHYTOLOGIST

Responses of soil biological traits and bacterial communities to nitrogen fertilization mediate maize yields across three soil types

(2018) Hailing Yu et al.   SOIL & TILLAGE RESEARCH

Drought-Induced Accumulation of Root Exudates Supports Post-drought Recovery of Microbes in Mountain Grassland

(2018) Stefan Karlowsky et al.   Frontiers in Plant Science

Drought and host selection influence bacterial community dynamics in the grass root microbiome

(2017) Dan Naylor et al.   ISME Journal

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots

(2017) Peng Yu et al.   NEW PHYTOLOGIST

Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes

(2017) Christian Santos-Medellín et al.   mBio

Resistance and resilience of root fungal communities to water limitation in a temperate agroecosystem

(2017) Jessie R. Furze et al.   Ecology and Evolution

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

Dark Septate Endophytic Fungi Help Tomato to Acquire Nutrients from Ground Plant Material

(2017) Carlos Vergara et al.   Frontiers in Microbiology

Long-Term Rock Phosphate Fertilization Impacts the Microbial Communities of Maize Rhizosphere

(2017) Ubiana C. Silva et al.   Frontiers in Microbiology

Roles, Regulation, and Agricultural Application of Plant Phosphate Transporters

(2017) Duoliya Wang et al.   Frontiers in Plant Science

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Nitrogen fertilizer rate affects root exudation, the rhizosphere microbiome and nitrogen-use-efficiency of maize

(2016) Shusheng Zhu et al.   APPLIED SOIL ECOLOGY

Rice rhizodeposition and its utilization by microbial groups depends on N fertilization

(2016) Tida Ge et al.   BIOLOGY AND FERTILITY OF SOILS

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

Giving back to the community: microbial mechanisms of plant-soil interactions

(2016) Sur Herrera Paredes et al.   FUNCTIONAL ECOLOGY

Drought history affects grassland plant and microbial carbon turnover during and after a subsequent drought event

(2016) Lucia Fuchslueger et al.   JOURNAL OF ECOLOGY

The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots

(2016) Larry M. York et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rhizodeposition under drought and consequences for soil communities and ecosystem resilience

(2016) Catherine Preece et al.   PLANT AND SOIL

Phosphorus availability and microbial community in the rhizosphere of intercropped cereal and legume along a P-fertilizer gradient

(2016) Xiaoyan Tang et al.   PLANT AND SOIL

Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat

(2016) Akitomo Kawasaki et al.   PLoS One

Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity

(2015) Barbara Reinhold-Hurek et al.   Annual Review of Phytopathology

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application

(2015) Yun Kit Yeoh et al.   ENVIRONMENTAL MICROBIOLOGY

Role of root microbiota in plant productivity

(2015) A. Tkacz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nicotiana Roots Recruit Rare Rhizosphere Taxa as Major Root-Inhabiting Microbes

(2015) Muhammad Saleem et al.   MICROBIAL ECOLOGY

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Bacterial Modulation of Plant Ethylene Levels

(2015) Elisa Gamalero et al.   PLANT PHYSIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress

(2015) Raheleh Sheibani-Tezerji et al.   mBio

Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere

(2015) Chanyarat Paungfoo-Lonhienne et al.   Scientific Reports

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

Arbuscular mycorrhiza and nitrogen: implications for individual plants through to ecosystems

(2014) Angela Hodge et al.   PLANT AND SOIL

Long-term effects of mineral fertilizers on soil microorganisms – A review

(2014) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Increased drought stress resilience of maize through endophytic colonization by Burkholderia phytofirmans PsJN and Enterobacter sp. FD17

(2013) Muhammad Naveed et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Aerenchyma formation in crop species: A review

(2013) Takaki Yamauchi et al.   FIELD CROPS RESEARCH

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

METABOLITE PROFILING OF SHOOT EXTRACTS, ROOT EXTRACTS, AND ROOT EXUDATES OF RICE PLANT UNDER PHOSPHORUS DEFICIENCY

(2013) Keitaro Tawaraya et al.   JOURNAL OF PLANT NUTRITION

Targeted genome modification of crop plants using a CRISPR-Cas system

(2013) Qiwei Shan et al.   NATURE BIOTECHNOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Contrasting arbuscular mycorrhizal communities colonizing different host plants show a similar response to a soil phosphorus concentration gradient

(2013) Paul Gosling et al.   NEW PHYTOLOGIST

The global nitrogen cycle in the twenty-first century

(2013) D. Fowler et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ethylene - and oxygen signalling - drive plant survival during flooding

(2013) L. A. C. J. Voesenek et al.   PLANT BIOLOGY

Linking Plant Nutritional Status to Plant-Microbe Interactions

(2013) Lilia C. Carvalhais et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

AMF-induced tolerance to drought stress in citrus: A review

(2013) Qiang-Sheng Wu et al.   SCIENTIA HORTICULTURAE

Effect of nitrogen and phosphorus fertilization on the composition of rhizobacterial communities of two Chilean Andisol pastures

(2013) Milko A. Jorquera et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Human-induced nitrogen–phosphorus imbalances alter natural and managed ecosystems across the globe

(2013) Josep Peñuelas et al.   Nature Communications

Global flood risk under climate change

(2013) Yukiko Hirabayashi et al.   Nature Climate Change

Root traits contributing to plant productivity under drought

(2013) Louise H. Comas et al.   Frontiers in Plant Science

Fertilization management affects the alkaline phosphatase bacterial community in barley rhizosphere soil

(2012) Sagar Chhabra et al.   BIOLOGY AND FERTILITY OF SOILS

Phosphorus: a limiting nutrient for humanity?

(2012) James J Elser   CURRENT OPINION IN BIOTECHNOLOGY

Changes in root-associated microbial communities are determined by species-specific plant growth responses to stress and disturbance

(2012) Abderrahim Bouasria et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Effect of nitrogen and waterlogging on denitrifier gene abundance, community structure and activity in the rhizosphere of wheat

(2012) Kelly Hamonts et al.   FEMS MICROBIOLOGY ECOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Translocation and turnover of rhizodeposit carbon within soil microbial communities of an extensive grassland ecosystem

(2012) Wajira K. Balasooriya et al.   PLANT AND SOIL

1-Aminocyclopropane-1-carboxylic acid (ACC) deaminase-containing rhizobacteria protect Ocimum sanctum plants during waterlogging stress via reduced ethylene generation

(2012) Deepti Barnawal et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming

(2012) Ramona Marasco et al.   PLoS One

Soil Nitrogen Availability and Plant Genotype Modify the Nutrition Strategies of M. truncatula and the Associated Rhizosphere Microbial Communities

(2012) Anouk Zancarini et al.   PLoS One

The Rules of Engagement in the Legume-Rhizobial Symbiosis

(2011) Giles E.D. Oldroyd et al.   Annual Review of Genetics

Roles of Arbuscular Mycorrhizas in Plant Nutrition and Growth: New Paradigms from Cellular to Ecosystem Scales

(2011) Sally E. Smith et al.   Annual Review of Plant Biology

Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes

(2011) Radhey S. Gupta   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Soil Microorganisms Mediating Phosphorus Availability Update on Microbial Phosphorus

(2011) A. E. Richardson et al.   PLANT PHYSIOLOGY

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Incidence and diversity of phosphate-solubilising bacteria are linked to phosphorus status in grassland soils

(2011) Carolyn Mander et al.   SOIL BIOLOGY & BIOCHEMISTRY

Peak Phosphorus: Clarifying the Key Issues of a Vigorous Debate about Long-Term Phosphorus Security

(2011) Dana Cordell et al.   Sustainability

Changes in precipitation with climate change

(2010) KE Trenberth   CLIMATE RESEARCH

Terrestrial phosphorus limitation: mechanisms, implications, and nitrogen–phosphorus interactions

(2010) Peter M. Vitousek et al.   ECOLOGICAL APPLICATIONS

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems

(2010) Kelly S. Ramirez et al.   ECOLOGY

Climate change effects on beneficial plant-microorganism interactions

(2010) Stéphane Compant et al.   FEMS MICROBIOLOGY ECOLOGY

Drought-resistant fungi control soil organic matter decomposition and its response to temperature

(2010) J.C. YUSTE et al.   GLOBAL CHANGE BIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

The regulation of arbuscular mycorrhizal symbiosis by phosphate in pea involves early and systemic signalling events

(2010) Coline Balzergue et al.   JOURNAL OF EXPERIMENTAL BOTANY

Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency

(2010) S. Kant et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency

(2010) Lilia C. Carvalhais et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Substantial nitrogen acquisition by arbuscular mycorrhizal fungi from organic material has implications for N cycling

(2010) A. Hodge et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The story of phosphorus: Global food security and food for thought

(2009) Dana Cordell et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Nutrient Imbalances in Agricultural Development

(2009) P. M. Vitousek et al.   SCIENCE

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant growth promotion by phosphate solubilizing fungi – current perspective

(2009) Mohammad Saghir Khan et al.   Archives of Agronomy and Soil Science

NITROGEN LIMITATION OF NET PRIMARY PRODUCTIVITY IN TERRESTRIAL ECOSYSTEMS IS GLOBALLY DISTRIBUTED

(2008) David S. LeBauer et al.   ECOLOGY

Summer drought decreases soil fungal diversity and associated phenol oxidase activity in upland Calluna heathland soil

(2008) Hannah Toberman et al.   FEMS MICROBIOLOGY ECOLOGY

The Root-Colonizing EndophytePirifomospora indicaConfers Drought Tolerance inArabidopsisby Stimulating the Expression of Drought Stress–Related Genes in Leaves

(2008) Irena Sherameti et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY