The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots

New Methods To Unravel Rhizosphere Processes

(2016) Eva Oburger et al.   TRENDS IN PLANT SCIENCE

Root growth dynamics inside and outside of soil biopores as affected by crop sequence determined with the profile wall method

(2015) Eusun Han et al.   BIOLOGY AND FERTILITY OF SOILS

Spatial distribution of rhizodeposits provides built-in water potential gradient in the rhizosphere

(2015) Teamrat A. Ghezzehei et al.   ECOLOGICAL MODELLING

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

Assessing the influence of the rhizosphere on soil hydraulic properties using X-ray computed tomography and numerical modelling

(2015) Keith R. Daly et al.   JOURNAL OF EXPERIMENTAL BOTANY

Modelling the coordination of the controls of stomatal aperture, transpiration, leaf growth, and abscisic acid: update and extension of the Tardieu–Davies model

(2015) François Tardieu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Direct comparison of MRI and X-ray CT technologies for 3D imaging of root systems in soil: potential and challenges for root trait quantification

(2015) Ralf Metzner et al.   Plant Methods

Negligible effect of X-ray μ-CT scanning on archaea and bacteria in an agricultural soil

(2015) Hannes Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial hotspots and hot moments in soil: Concept & review

(2015) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Three-dimensional quantification of soil hydraulic properties using X-ray Computed Tomography and image-based modeling

(2015) Saoirse R. Tracy et al.   WATER RESOURCES RESEARCH

Nitrogen fluxes at the root-soil interface show a mismatch of nitrogen fertilizer supply and sugarcane root uptake capacity

(2015) Richard Brackin et al.   Scientific Reports

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

(2015) Rubén Rellán-Álvarez et al.   eLife

Associations with rhizosphere bacteria can confer an adaptive advantage to plants

(2015) Cara H. Haney et al.   Nature Plants

A multi-imaging approach to study the root–soil interface

(2014) Nicole Rudolph-Mohr et al.   ANNALS OF BOTANY

Understanding the genetic control and physiological traits associated with rhizosheath production by barley (Hordeum vulgare)

(2014) Timothy S. George et al.   NEW PHYTOLOGIST

Spatial and temporal dynamics of hotspots of enzyme activity in soil as affected by living and dead roots—a soil zymography analysis

(2014) Marie Spohn et al.   PLANT AND SOIL

Visualization of Root Water Uptake: Quantification of Deuterated Water Transport in Roots Using Neutron Radiography and Numerical Modeling

(2014) M. Zarebanadkouki et al.   PLANT PHYSIOLOGY

Plant roots use a patterning mechanism to position lateral root branches toward available water

(2014) Y. Bao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing Soil Nitrogen Availability using Microdialysis-Derived Diffusive Flux Measurements

(2014) R. Shaw et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Circadian rhythms of hydraulic conductance and growth are enhanced by drought and improve plant performance

(2014) Cecilio F. Caldeira et al.   Nature Communications

Disentangling who is who during rhizosphere acidification in root interactions: combining fluorescence with optode techniques

(2014) Marc Faget et al.   Frontiers in Plant Science

Crabgrass (Digitaria sanguinalis) Allelochemicals That Interfere with Crop Growth and the Soil Microbial Community

(2013) Bin Zhou et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Flavonoids: Their Structure, Biosynthesis and Role in the Rhizosphere, Including Allelopathy

(2013) Leslie A. Weston et al.   JOURNAL OF CHEMICAL ECOLOGY

Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance

(2013) Yakov Kuzyakov et al.   NEW PHYTOLOGIST

High resolution synchrotron imaging of wheat root hairs growing in soil and image based modelling of phosphate uptake

(2013) Samuel D. Keyes et al.   NEW PHYTOLOGIST

Synthesis and modeling perspectives of rhizosphere priming

(2013) Weixin Cheng et al.   NEW PHYTOLOGIST

Spatio-temporal mapping of local soil pH changes induced by roots of lupin and soft-rush

(2013) Nicole Rudolph et al.   PLANT AND SOIL

Light for the dark side of plant life: —Planar optodes visualizing rhizosphere processes

(2013) Stephan Blossfeld   PLANT AND SOIL

Modelling root–soil interactions using three–dimensional models of root growth, architecture and function

(2013) Vanessa M. Dunbabin et al.   PLANT AND SOIL

Quantifying coupled deformation and water flow in the rhizosphere using X-ray microtomography and numerical simulations

(2013) Jazmín E. Aravena et al.   PLANT AND SOIL

Recovering complete plant root system architectures from soil via X-ray μ-Computed Tomography

(2013) Stefan Mairhofer et al.   Plant Methods

Root Systems Biology: Integrative Modeling across Scales, from Gene Regulatory Networks to the Rhizosphere

(2013) K. Hill et al.   PLANT PHYSIOLOGY

Effects of X-Ray Dose On Rhizosphere Studies Using X-Ray Computed Tomography

(2013) Susan Zappala et al.   PLoS One

Distribution of microbial- and root-derived phosphatase activities in the rhizosphere depending on P availability and C allocation – Coupling soil zymography with 14C imaging

(2013) Marie Spohn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil zymography – A novel in situ method for mapping distribution of enzyme activity in soil

(2013) Marie Spohn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rhizosphere wettability decreases with root age: a problem or a strategy to increase water uptake of young roots?

(2013) Andrea Carminati   Frontiers in Plant Science

Integration of root phenes for soil resource acquisition

(2013) Larry M. York et al.   Frontiers in Plant Science

Molecular mechanisms of hydrotropism in seedling roots of Arabidopsis thaliana (Brassicaceae)

(2012) Teppei Moriwaki et al.   AMERICAN JOURNAL OF BOTANY

Quantifying the impact of soil compaction on root system architecture in tomato (Solanum lycopersicum) by X-ray micro-computed tomography

(2012) Saoirse R. Tracy et al.   ANNALS OF BOTANY

Sensing and analysis of soluble phosphates in environmental samples: A review

(2012) Christopher Warwick et al.   BIOSENSORS & BIOELECTRONICS

Mechanisms for cellular transport and release of allelochemicals from plant roots into the rhizosphere

(2012) L. A. Weston et al.   JOURNAL OF EXPERIMENTAL BOTANY

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Gold-FISH: A new approach for the in situ detection of single microbial cells combining fluorescence and scanning electron microscopy

(2012) Hannes Schmidt et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

High-resolution chemical imaging of labile phosphorus in the rhizosphere of Brassica napus L. cultivars

(2011) Jakob Santner et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Linking Soil O2, CO2, and CH4Concentrations in a Wetland Soil: Implications for CO2and CH4Fluxes

(2011) Bo Elberling et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Imaging-optode measurements of ammonium distribution in soil after different manure amendments

(2011) S. Delin et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Three-dimensional visualization and quantification of water content in the rhizosphere

(2011) Ahmad B. Moradi et al.   NEW PHYTOLOGIST

Sources of variation in plant responses to belowground insect herbivory: a meta-analysis

(2011) Elena L. Zvereva et al.   OECOLOGIA

Quantifying the effect of soil compaction on three varieties of wheat (Triticum aestivum L.) using X-ray Micro Computed Tomography (CT)

(2011) Saoirse R. Tracy et al.   PLANT AND SOIL

Developing X-ray Computed Tomography to non-invasively image 3-D root systems architecture in soil

(2011) S. J. Mooney et al.   PLANT AND SOIL

The potential of microdialysis to monitor organic and inorganic nitrogen compounds in soil

(2011) Erich Inselsbacher et al.   SOIL BIOLOGY & BIOCHEMISTRY

HOBE: A Hydrological Observatory

(2011) Karsten H. Jensen et al.   VADOSE ZONE JOURNAL

Effects of Root-Induced Compaction on Rhizosphere Hydraulic Properties - X-ray Microtomography Imaging and Numerical Simulations

(2010) Jazmín E. Aravena et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils

(2010) Xavier Draye et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Circadian Clock Modulates Water Dynamics and Aquaporin Expression in Arabidopsis Roots

(2010) Tomoyuki Takase et al.   PLANT AND CELL PHYSIOLOGY

Dynamics of soil water content in the rhizosphere

(2010) Andrea Carminati et al.   PLANT AND SOIL

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Combined MRI-PET dissects dynamic changes in plant structures and functions

(2009) Siegfried Jahnke et al.   PLANT JOURNAL

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Determination of Ammonium Turnover and Flow Patterns Close to Roots Using Imaging Optodes

(2008) Niklas Strömberg   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial community composition and rhizodeposit-carbon assimilation in differently managed temperate grassland soils

(2008) Karolien Denef et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microsensing of Water Dynamics and Root Distributions in Sandy Soils

(2008) Eran Segal et al.   VADOSE ZONE JOURNAL

Changes in Soil Water Content Resulting from Root Uptake Monitored by Magnetic Resonance Imaging

(2008) A. Pohlmeier et al.   VADOSE ZONE JOURNAL

Growth model for arbuscular mycorrhizal fungi

(2007) A Schnepf et al.   Journal of the Royal Society Interface

Detection of microorganisms in undisturbed soil by combining fluorescence in situ hybridization (FISH) and micropedological methods

(2007) Thilo Eickhorst et al.   SOIL BIOLOGY & BIOCHEMISTRY