Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat

Differential growth responses of Brachypodium distachyon genotypes to inoculation with plant growth promoting rhizobacteria

(2016) Fernanda P. do Amaral et al.   PLANT MOLECULAR BIOLOGY

Engineering the plant rhizosphere

(2015) Yanxia Zhang et al.   CURRENT OPINION IN BIOTECHNOLOGY

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

Quantitative profiling of polar primary metabolites of two chickpea cultivars with contrasting responses to salinity

(2015) Daniel Anthony Dias et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Specific influence of white clover on the rhizosphere microbial community in response to polycyclic aromatic hydrocarbon (PAH) contamination

(2015) Akitomo Kawasaki et al.   PLANT AND SOIL

Wheat roots efflux a diverse array of organic N compounds and are highly proficient at their recapture

(2015) Charles R. Warren   PLANT AND SOIL

Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots acrossBrachypodium distachyonAccessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments

(2015) Vincent Chochois et al.   PLANT PHYSIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reduced dependence of rhizosphere microbiome on plant-derived carbon in 32-year long-term inorganic and organic fertilized soils

(2015) Chao Ai et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Accelerated Growth Rate and Increased Drought Stress Resilience of the Model Grass Brachypodium distachyon Colonized by Bacillus subtilis B26

(2015) François Gagné-Bourque et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Evolution of bacterial communities in the wheat crop rhizosphere

(2014) Suzanne Donn et al.   ENVIRONMENTAL MICROBIOLOGY

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Brachypodium distachyonis a pathosystem model for the study of the wheat disease rhizoctonia root rot

(2014) K. Schneebeli et al.   PLANT PATHOLOGY

An Illumina metabarcoding pipeline for fungi

(2014) Miklós Bálint et al.   Ecology and Evolution

Impact of fine litter chemistry on lignocellulolytic enzyme efficiency during decomposition of maize leaf and root in soil

(2013) Bilal Ahmad Zafar Amin et al.   BIOGEOCHEMISTRY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Biomechanics of nodal, seminal and lateral roots of barley: effects of diameter, waterlogging and mechanical impedance

(2013) K. W. Loades et al.   PLANT AND SOIL

Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effect of organic acids from tomato root exudates on rhizosphere colonization of Bacillus amyloliquefaciens T-5

(2012) Shiyong Tan et al.   APPLIED SOIL ECOLOGY

Fungal communities associated with durum wheat production system: A characterization by growth stage, plant organ and preceding crop

(2012) Vladimir Vujanovic et al.   CROP PROTECTION

Application of Brachypodium to the genetic improvement of wheat roots

(2012) V. Chochois et al.   JOURNAL OF EXPERIMENTAL BOTANY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbe-Associated Molecular Patterns-Triggered Root Responses Mediate Beneficial Rhizobacterial Recruitment in Arabidopsis

(2012) V. Lakshmanan et al.   PLANT PHYSIOLOGY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Actinobacterial community dominated by a distinct clade in acidic soil of a waterlogged deciduous forest

(2011) Jan Kopecky et al.   FEMS MICROBIOLOGY ECOLOGY

Ovine pedomics: the first study of the ovine foot 16S rRNA-based microbiome

(2011) Leo A Calvo-Bado et al.   ISME Journal

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression

(2011) Hikmet Budak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Temporal dynamics and genetic diversity of chemotactic-competent microbial populations in the rhizosphere

(2010) Alison Buchan et al.   ENVIRONMENTAL MICROBIOLOGY

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

(2010) R. Henrik Nilsson et al.   Fungal Ecology

Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency

(2010) Lilia C. Carvalhais et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Life history determines biogeographical patterns of soil bacterial communities over multiple spatial scales

(2010) A. BISSETT et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses

(2010) Janet A. Higgins et al.   PLoS One

Quantitative Community Fingerprinting Methods for Estimating the Abundance of Operational Taxonomic Units in Natural Microbial Communities

(2009) A. Ramette   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

The shoot and root growth of Brachypodium and its potential as a model for wheat and other cereal crops

(2009) Michelle Watt et al.   FUNCTIONAL PLANT BIOLOGY

Rhizosphere engineering and management for sustainable agriculture

(2009) Peter R. Ryan et al.   PLANT AND SOIL

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Conserved microRNAs and their targets in model grass species Brachypodium distachyon

(2009) Turgay Unver et al.   PLANTA

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

(2008) Tim Hulsen et al.   BMC GENOMICS

Rice blast infection of Brachypodium distachyon as a model system to study dynamic host/pathogen interactions

(2008) David Parker et al.   Nature Protocols

Types, structure and potential for axial water flow in the deepest roots of field-grown cereals

(2008) Michelle Watt et al.   NEW PHYTOLOGIST

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria

(2008) T. Rudrappa et al.   PLANT PHYSIOLOGY

Rhizophlyctidales—a new order in Chytridiomycota

(2008) Peter M. Letcher et al.