Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
出版年份 2019 全文链接
标题
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
作者
关键词
-
出版物
GigaScience
Volume 8, Issue 8, Pages -
出版商
Oxford University Press (OUP)
发表日期
2019-07-31
DOI
10.1093/gigascience/giz092
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies
- (2019) Paul P. Gardner et al. PeerJ
- Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale
- (2019) Henrik Krehenwinkel et al. GigaScience
- Invasion genetics from eDNA and thousands of larvae: A targeted metabarcoding assay that distinguishes species and population variation of zebra and quagga mussels
- (2019) Nathaniel T. Marshall et al. Ecology and Evolution
- One‐locus‐several‐primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies
- (2019) Emmanuel Corse et al. Ecology and Evolution
- Clinical metagenomics
- (2019) Charles Y. Chiu et al. NATURE REVIEWS GENETICS
- Metabarcoding a Diverse Arthropod Mock Community
- (2019) Thomas W. A. Braukmann et al. Molecular Ecology Resources
- Biodiversity assessments in the 21st century: the potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding
- (2019) Camila D. Ritter et al. GENOME
- Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid
- (2019) Steve Miller et al. GENOME RESEARCH
- DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions
- (2019) Lucie Zinger et al. MOLECULAR ECOLOGY
- An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies
- (2019) Jan Axtner et al. GigaScience
- High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution
- (2019) Benjamin J Callahan et al. NUCLEIC ACIDS RESEARCH
- Towards PacBio‐based pan‐eukaryote metabarcoding using full‐length ITS sequences
- (2019) Leho Tedersoo et al. Environmental Microbiology Reports
- Optimizing surveillance strategies for early detection of invasive alien species
- (2019) Denys Yemshanov et al. ECOLOGICAL ECONOMICS
- Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline
- (2019) Charlie Pauvert et al. Fungal Ecology
- Opportunities and limitations for DNA metabarcoding in Australasian plant-pathogen biosecurity
- (2018) S. R. Bulman et al. AUSTRALASIAN PLANT PATHOLOGY
- Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing
- (2018) Laura E. MacConaill et al. BMC GENOMICS
- Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms
- (2018) Maura Costello et al. BMC GENOMICS
- A Sequel to Sanger: amplicon sequencing that scales
- (2018) Paul D. N. Hebert et al. BMC GENOMICS
- Multifaceted DNA metabarcoding: Validation of a noninvasive, next-generation approach to studying bat populations
- (2018) Joel F. Swift et al. Evolutionary Applications
- Optimization and performance testing of a sequence processing pipeline applied to detection of nonindigenous species
- (2018) Ryan Scott et al. Evolutionary Applications
- Improved biosecurity surveillance of non-native forest insects: a review of current methods
- (2018) Therese M. Poland et al. JOURNAL OF PEST SCIENCE
- Biosurveillance of forest insects: part II—adoption of genomic tools by end user communities and barriers to integration
- (2018) Pierre Bilodeau et al. JOURNAL OF PEST SCIENCE
- The choice of universal primers and the characteristics of the species mixture determine when DNA metabarcoding can be quantitative
- (2018) Josep Piñol et al. MOLECULAR ECOLOGY
- Scaling up: A guide to high-throughput genomic approaches for biodiversity analysis
- (2018) Teresita M. Porter et al. MOLECULAR ECOLOGY
- Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?
- (2018) Bruce E. Deagle et al. MOLECULAR ECOLOGY
- How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
- (2018) Vanessa A. Mata et al. MOLECULAR ECOLOGY
- Minimizing polymerase biases in metabarcoding
- (2018) Ruth V. Nichols et al. Molecular Ecology Resources
- Metabarcoding for the parallel identification of several hundred predators and their prey: Application to bat species diet analysis
- (2018) Maxime Galan et al. Molecular Ecology Resources
- Capture enrichment of aquatic environmental DNA: A first proof of concept
- (2018) Taylor M. Wilcox et al. Molecular Ecology Resources
- Computational correction of index switching in multiplexed sequencing libraries
- (2018) Anton J M Larsson et al. NATURE METHODS
- Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations
- (2018) Jesse J. Salk et al. NATURE REVIEWS GENETICS
- Best practices for analysing microbiomes
- (2018) Rob Knight et al. NATURE REVIEWS MICROBIOLOGY
- From laboratory to point of entry: development and implementation of a loop-mediated isothermal amplification (LAMP)-based genetic identification system to prevent introduction of quarantine insect species
- (2018) Simon Blaser et al. PEST MANAGEMENT SCIENCE
- Instances of erroneous DNA barcoding of metazoan invertebrates: Are universal cox1 gene primers too “universal”?
- (2018) Monika Mioduchowska et al. PLoS One
- The effect of DNA degradation bias in passive sampling devices on metabarcoding studies of arthropod communities and their associated microbiota
- (2018) Henrik Krehenwinkel et al. PLoS One
- Global rise in emerging alien species results from increased accessibility of new source pools
- (2018) Hanno Seebens et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cryptic invasions: A review
- (2018) Pedro Morais et al. SCIENCE OF THE TOTAL ENVIRONMENT
- The Third Revolution in Sequencing Technology
- (2018) Erwin L. van Dijk et al. TRENDS IN GENETICS
- Automated high throughput animal CO1 metabarcode classification
- (2018) Teresita M. Porter et al. Scientific Reports
- A reference cytochrome c oxidase subunit I database curated for hierarchical classification of arthropod metabarcoding data
- (2018) Rodney T. Richardson et al. PeerJ
- Can non-destructive DNA extraction of bulk invertebrate samples be used for metabarcoding?
- (2018) Melissa E. Carew et al. PeerJ
- Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
- (2018) Nicholas A. Bokulich et al. Microbiome
- Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run
- (2018) Yi-Chun Yeh et al. mSystems
- The impact of high throughput sequencing on plant health diagnostics
- (2018) Ian P. Adams et al. EUROPEAN JOURNAL OF PLANT PATHOLOGY
- Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities
- (2018) Guang K. Zhang et al. Evolutionary Applications
- Biosurveillance of forest insects: part I—integration and application of genomic tools to the surveillance of non-native forest insects
- (2018) Amanda D. Roe et al. JOURNAL OF PEST SCIENCE
- Quantitative and qualitative assessment of pollen DNA metabarcoding using constructed species mixtures
- (2018) Karen L. Bell et al. MOLECULAR ECOLOGY
- Why the COI barcode should be the community DNA metabarcode for the metazoa
- (2018) Carmelo Andújar et al. MOLECULAR ECOLOGY
- New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods
- (2018) Daniel Marquina et al. Molecular Ecology Resources
- The contribution of mitochondrial metagenomics to large-scale data mining and phylogenetic analysis of Coleoptera
- (2018) Benjamin Linard et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- A case of mistaken identity
- (2018) Ruth E Hanna et al. NATURE BIOTECHNOLOGY
- Over 2.5 million COI sequences in GenBank and growing
- (2018) Teresita M. Porter et al. PLoS One
- Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA
- (2018) Roger Volden et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis
- (2018) Simon A. Hardwick et al. Nature Communications
- Slippage of degenerate primers can cause variation in amplicon length
- (2018) Vasco Elbrecht et al. Scientific Reports
- Toward an ecoregion scale evaluation of eDNA metabarcoding primers: A case study for the freshwater fish biodiversity of the Murray-Darling Basin (Australia)
- (2018) Jonas Bylemans et al. Ecology and Evolution
- Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection
- (2018) Wei Gu et al. Annual Review of Pathology-Mechanisms of Disease
- DNA metabarcoding from sample fixative as a quick and voucher-preserving biodiversity assessment method
- (2018) Vera M A Zizka et al. GENOME
- High-throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations
- (2018) Leho Tedersoo et al. Molecular Ecology Resources
- Promises and pitfalls of using high-throughput sequencing for diet analysis
- (2018) Antton Alberdi et al. Molecular Ecology Resources
- Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
- (2018) Ryan R. Wick et al. PLoS Computational Biology
- NanoAmpli-Seq: A workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform.
- (2018) Szymon T Calus et al. GigaScience
- Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
- (2018) Nicole M. Davis et al. Microbiome
- The importance of molecular markers and primer design when characterizing biodiversity from environmental DNA
- (2017) Joanna R. Freeland GENOME
- Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
- (2017) Benjamin J Callahan et al. ISME Journal
- Early detection monitoring for aquatic non-indigenous species: Optimizing surveillance, incorporating advanced technologies, and identifying research needs
- (2017) Anett S. Trebitz et al. JOURNAL OF ENVIRONMENTAL MANAGEMENT
- In Silico Proficiency Testing for Clinical Next-Generation Sequencing
- (2017) Eric J. Duncavage et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Metagenomic arbovirus detection using MinION nanopore sequencing
- (2017) Jana Batovska et al. JOURNAL OF VIROLOGICAL METHODS
- A DNA barcode database of Australia’s freshwater macroinvertebrate fauna
- (2017) M. E. Carew et al. MARINE AND FRESHWATER RESEARCH
- Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
- (2017) Kristy Deiner et al. MOLECULAR ECOLOGY
- Effective mosquito and arbovirus surveillance using metabarcoding
- (2017) J. Batovska et al. Molecular Ecology Resources
- Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: Evidence from a known tropical mammal community
- (2017) Torrey W. Rodgers et al. Molecular Ecology Resources
- Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
- (2017) Rashmi Sinha et al. NATURE BIOTECHNOLOGY
- Reference standards for next-generation sequencing
- (2017) Simon A. Hardwick et al. NATURE REVIEWS GENETICS
- Towards a genomics-informed, real-time, global pathogen surveillance system
- (2017) Jennifer L. Gardy et al. NATURE REVIEWS GENETICS
- PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives
- (2017) Leho Tedersoo et al. NEW PHYTOLOGIST
- GenBank
- (2017) Dennis A Benson et al. NUCLEIC ACIDS RESEARCH
- Invasion Science: A Horizon Scan of Emerging Challenges and Opportunities
- (2017) Anthony Ricciardi et al. TRENDS IN ECOLOGY & EVOLUTION
- Next-Generation Global Biomonitoring: Large-scale, Automated Reconstruction of Ecological Networks
- (2017) David A. Bohan et al. TRENDS IN ECOLOGY & EVOLUTION
- Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding
- (2017) Henrik Krehenwinkel et al. Scientific Reports
- Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding
- (2017) Vasco Elbrecht et al. Ecology and Evolution
- A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies
- (2017) Sebastien Massart et al. Frontiers in Microbiology
- Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding
- (2017) Matthieu Leray et al. PeerJ
- Filling reference gaps via assembling DNA barcodes using high-throughput sequencing—moving toward barcoding the world
- (2017) Shanlin Liu et al. GigaScience
- Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples
- (2017) Alfred J. Arulandhu et al. GigaScience
- Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples
- (2017) Ryuji J. Machida et al. Scientific Data
- Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
- (2017) Amnon Amir et al. mSystems
- Examining Sources of Error in PCR by Single-Molecule Sequencing
- (2017) Vladimir Potapov et al. PLoS One
- Environmental DNA (eDNA) metabarcoding assays to detect invasive invertebrate species in the Great Lakes
- (2017) Katy E. Klymus et al. PLoS One
- Sensitivity and accuracy of high-throughput metabarcoding methods for early detection of invasive fish species
- (2017) Chelsea Hatzenbuhler et al. Scientific Reports
- Eradication of Invading Insect Populations: From Concepts to Applications
- (2016) Andrew M. Liebhold et al. Annual Review of Entomology
- Risk Analysis and Bioeconomics of Invasive Species to Inform Policy and Management
- (2016) David M. Lodge et al. Annual Review of Environment and Resources
- Quarantine Regulations and the Impact of Modern Detection Methods
- (2016) Robert R. Martin et al. Annual Review of Phytopathology
- Unbiased probabilistic taxonomic classification for DNA barcoding
- (2016) Panu Somervuo et al. BIOINFORMATICS
- Recent advances in lab-on-a-chip for biosensing applications
- (2016) Josiane P. Lafleur et al. BIOSENSORS & BIOELECTRONICS
- Quality filtering of Illumina index reads mitigates sample cross-talk
- (2016) Erik Scott Wright et al. BMC GENOMICS
- Active and passive environmental DNA surveillance of aquatic invasive species
- (2016) Megan Simmons et al. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES
- Early detection of aquatic invaders using metabarcoding reveals a high number of non-indigenous species in Canadian ports
- (2016) Emily A. Brown et al. DIVERSITY AND DISTRIBUTIONS
- Modelling of species distributions, range dynamics and communities under imperfect detection: advances, challenges and opportunities
- (2016) Gurutzeta Guillera-Arroita ECOGRAPHY
- Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems
- (2016) Darren M. Evans et al. FUNCTIONAL ECOLOGY
- DNA barcoding for biosecurity: case studies from the UK plant protection program
- (2016) Jennifer Hodgetts et al. GENOME
- A quantitative protocol for DNA metabarcoding of springtails (Collembola)
- (2016) Seikoh Saitoh et al. GENOME
- DNA barcodes for bio-surveillance: regulated and economically important arthropod plant pests
- (2016) Muhammad Ashfaq et al. GENOME
- Assuring the Quality of Next-Generation Sequencing in Clinical Microbiology and Public Health Laboratories
- (2016) Amy S. Gargis et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Accurate Sample Assignment in a Multiplexed, Ultrasensitive, High-Throughput Sequencing Assay for Minimal Residual Disease
- (2016) Jack Bartram et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Lessons from genome skimming of arthropod-preserving ethanol
- (2016) B. Linard et al. Molecular Ecology Resources
- Vector soup: high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding
- (2016) Arthur Kocher et al. Molecular Ecology Resources
- How to limit false positives in environmental DNA and metabarcoding?
- (2016) Gentile Francesco Ficetola et al. Molecular Ecology Resources
- Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
- (2016) Daryl M Gohl et al. NATURE BIOTECHNOLOGY
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Coming of age: ten years of next-generation sequencing technologies
- (2016) Sara Goodwin et al. NATURE REVIEWS GENETICS
- Phylogeny-aware identification and correction of taxonomically mislabeled sequences
- (2016) Alexey M. Kozlov et al. NUCLEIC ACIDS RESEARCH
- Global threat to agriculture from invasive species
- (2016) Dean R. Paini et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Strategies to improve usability and preserve accuracy in biological sequence databases
- (2016) Johan Bengtsson-Palme et al. PROTEOMICS
- Massive yet grossly underestimated global costs of invasive insects
- (2016) Corey J. A. Bradshaw et al. Nature Communications
- Global threats from invasive alien species in the twenty-first century and national response capacities
- (2016) Regan Early et al. Nature Communications
- Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil
- (2016) Paula Arribas et al. Methods in Ecology and Evolution
- PrimerMiner : an r package for development and in silico validation of DNA metabarcoding primers
- (2016) Vasco Elbrecht et al. Methods in Ecology and Evolution
- Estimating species richness using environmental DNA
- (2016) Brett P. Olds et al. Ecology and Evolution
- Molecular identification of mosquitoes (Diptera: Culicidae) in southeastern Australia
- (2016) Jana Batovska et al. Ecology and Evolution
- Metabarcoding of fungal communities associated with bark beetles
- (2016) Kirsten E. Miller et al. Ecology and Evolution
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
- (2016) Alfonso Benítez-Páez et al. GigaScience
- Mitochondrial metagenomics: letting the genes out of the bottle
- (2016) Alex Crampton-Platt et al. GigaScience
- Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples
- (2015) Marta Pawluczyk et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Error filtering, pair assembly and error correction for next-generation sequencing reads
- (2015) Robert C. Edgar et al. BIOINFORMATICS
- DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens
- (2015) Thierry Comtet et al. BIOLOGICAL INVASIONS
- How will the ‘molecular revolution’ contribute to biological recording?
- (2015) Lori Lawson Handley BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- DNA metabarcoding of insects and allies: an evaluation of primers and pipelines
- (2015) G.-J. Brandon-Mong et al. BULLETIN OF ENTOMOLOGICAL RESEARCH
- Benefits of invasion prevention: Effect of time lags, spread rates, and damage persistence
- (2015) Rebecca S. Epanchin-Niell et al. ECOLOGICAL ECONOMICS
- Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species
- (2015) Jessica Stapley et al. MOLECULAR ECOLOGY
- Metagenome skimming for phylogenetic community ecology: a new era in biodiversity research
- (2015) Anna Papadopoulou et al. MOLECULAR ECOLOGY
- Targeted capture in evolutionary and ecological genomics
- (2015) Matthew R. Jones et al. MOLECULAR ECOLOGY
- Statistical approaches to account for false-positive errors in environmental DNA samples
- (2015) José J. Lahoz-Monfort et al. Molecular Ecology Resources
- Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material
- (2015) Austen C. Thomas et al. Molecular Ecology Resources
- Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates
- (2015) Eddy J. Dowle et al. Molecular Ecology Resources
- obitools: aunix-inspired software package for DNA metabarcoding
- (2015) Frédéric Boyer et al. Molecular Ecology Resources
- Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies
- (2015) Ida Baerholm Schnell et al. Molecular Ecology Resources
- Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis
- (2015) Shanlin Liu et al. Molecular Ecology Resources
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- Third generation sequencing: technology and its potential impact on evolutionary biodiversity research
- (2015) Christoph Bleidorn SYSTEMATICS AND BIODIVERSITY
- Detection and Isolation of Sindbis Virus from Mosquitoes Captured During an Outbreak in Sweden, 2013
- (2015) Joakim Bergqvist et al. VECTOR-BORNE AND ZOONOTIC DISEASES
- Insect vector-mediated transmission of plant viruses
- (2015) Anna E. Whitfield et al. VIROLOGY
- Recognizing false positives: synthetic oligonucleotide controls for environmental DNA surveillance
- (2015) Chris C. Wilson et al. Methods in Ecology and Evolution
- Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages
- (2015) Carola Gómez-Rodríguez et al. Methods in Ecology and Evolution
- High-throughput monitoring of wild bee diversity and abundance via mitogenomics
- (2015) Min Tang et al. Methods in Ecology and Evolution
- Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?
- (2015) Emily A. Brown et al. Ecology and Evolution
- Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods
- (2015) Jullien M. Flynn et al. Ecology and Evolution
- Big Data: Astronomical or Genomical?
- (2015) Zachary D. Stephens et al. PLOS BIOLOGY
- Insect-borne plant pathogenic bacteria: getting a ride goes beyond physical contact
- (2015) Zigmunds Orlovskis et al. Current Opinion in Insect Science
- Standardizing metadata and taxonomic identification in metabarcoding studies
- (2015) Leho Tedersoo et al. GigaScience
- From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows
- (2015) Dáithí C. Murray et al. PLoS One
- Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities
- (2015) Markus Majaneva et al. PLoS One
- Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
- (2015) Vasco Elbrecht et al. PLoS One
- Designing efficient surveys: spatial arrangement of sample points for detection of invasive species
- (2014) Luděk Berec et al. BIOLOGICAL INVASIONS
- DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
- (2014) B. E. Deagle et al. Biology Letters
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Biological invasions, climate change and genomics
- (2014) Steven L. Chown et al. Evolutionary Applications
- Methods-Based Proficiency Testing in Molecular Genetic Pathology
- (2014) Iris Schrijver et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Existence of species complex largely reduced barcoding success for invasive species of Tephritidae: a case study inBactroceraspp.
- (2014) F. Jiang et al. Molecular Ecology Resources
- Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias
- (2014) Laurence J. Clarke et al. Molecular Ecology Resources
- Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods
- (2014) J. Piñol et al. Molecular Ecology Resources
- Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data
- (2014) Gentile F. Ficetola et al. Molecular Ecology Resources
- Parsing ecological signal from noise in next generation amplicon sequencing
- (2014) Nhu H. Nguyen et al. NEW PHYTOLOGIST
- Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing
- (2014) Dylan P. Smith et al. PLoS One
- Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing
- (2014) Johan Decelle et al. PLoS One
- Rampant Nuclear Insertion of mtDNA across Diverse Lineages within Orthoptera (Insecta)
- (2014) Hojun Song et al. PLoS One
- Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics
- (2014) J. Gibson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Unified Classification of Alien Species Based on the Magnitude of their Environmental Impacts
- (2014) Tim M. Blackburn et al. PLOS BIOLOGY
- A method for designing complex biosecurity surveillance systems: detecting non-indigenous species of invertebrates on Barrow Island
- (2013) Peter J. L. Whittle et al. DIVERSITY AND DISTRIBUTIONS
- Biological invaders are threats to human health: an overview
- (2013) G. Mazza et al. ETHOLOGY ECOLOGY & EVOLUTION
- Spotted Wing Drosophila,Drosophila suzukii(Diptera: Drosophilidae), Trapped with Combinations of Wines and Vinegars
- (2013) Peter J. Landolt et al. FLORIDA ENTOMOLOGIST
- Who's for dinner? High-throughput sequencing reveals bat dietary differentiation in a biodiversity hotspot where prey taxonomy is largely undescribed
- (2013) Joanna M. Burgar et al. MOLECULAR ECOLOGY
- DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet
- (2013) M. De Barba et al. Molecular Ecology Resources
- Assessing DNA Barcoding as a Tool for Species Identification and Data Quality Control
- (2013) Yong-Yi Shen et al. PLoS One
- A comparative evaluation of sequence classification programs
- (2012) Adam L Bazinet et al. BMC BIOINFORMATICS
- Optimal surveillance and eradication of invasive species in heterogeneous landscapes
- (2012) Rebecca S. Epanchin-Niell et al. ECOLOGY LETTERS
- Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?
- (2012) Tor Carlsen et al. Fungal Ecology
- DNA barcoding invasive insects: database roadblocks
- (2012) Laura M. Boykin et al. INVERTEBRATE SYSTEMATICS
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Barcoding Queensland Fruit Flies (Bactrocera tryoni): impediments and improvements
- (2012) MARK J. BLACKET et al. Molecular Ecology Resources
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms
- (2012) Yemin Lan et al. PLoS One
- Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels
- (2012) Brant C. Faircloth et al. PLoS One
- Sequencing our way towards understanding global eukaryotic biodiversity
- (2012) Holly M. Bik et al. TRENDS IN ECOLOGY & EVOLUTION
- Impacts of biological invasions: what's what and the way forward
- (2012) Daniel Simberloff et al. TRENDS IN ECOLOGY & EVOLUTION
- Advances in multiplex PCR: balancing primer efficiencies and improving detection success
- (2012) Daniela Sint et al. Methods in Ecology and Evolution
- Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
- (2012) Mehrdad Hajibabaei et al. BMC ECOLOGY
- Documenting the terrestrial invertebrate fauna of Barrow Island, Western Australia
- (2011) Shae K Callan et al. AUSTRALIAN JOURNAL OF ENTOMOLOGY
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
- (2011) B. J. Haas et al. GENOME RESEARCH
- Utility of Multi-Gene Loci for Forensic Species Diagnosis of Blowflies
- (2011) Farrah Zaidi et al. JOURNAL OF INSECT SCIENCE
- Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
- (2011) Martin Kircher et al. NUCLEIC ACIDS RESEARCH
- Common goals: policy implications of DNA barcoding as a protocol for identification of arthropod pests
- (2010) Robin Floyd et al. BIOLOGICAL INVASIONS
- Comparative performances of DNA barcoding across insect orders
- (2010) Massimiliano Virgilio et al. BMC BIOINFORMATICS
- An In silico approach for the evaluation of DNA barcodes
- (2010) Gentile Ficetola et al. BMC GENOMICS
- A rapid non-destructive DNA extraction method for insects and other arthropods
- (2010) Mark A. Castalanelli et al. JOURNAL OF ASIA-PACIFIC ENTOMOLOGY
- Target-enrichment strategies for next-generation sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications
- (2010) Sophie Champlot et al. PLoS One
- Integrative Taxonomy: A Multisource Approach to Exploring Biodiversity
- (2009) Birgit C. Schlick-Steiner et al. Annual Review of Entomology
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies
- (2009) Thaung Hlaing et al. BMC GENETICS
- Trade, transport and trouble: managing invasive species pathways in an era of globalization
- (2009) Philip E. Hulme JOURNAL OF APPLIED ECOLOGY
- Info-gap theory and robust design of surveillance for invasive species: The case study of Barrow Island
- (2009) Lior Davidovitch et al. JOURNAL OF ENVIRONMENTAL MANAGEMENT
- Ecological effects of invasive alien insects
- (2008) Marc Kenis et al. BIOLOGICAL INVASIONS
- A universal DNA mini-barcode for biodiversity analysis
- (2008) Isabelle Meusnier et al. BMC GENOMICS
- Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
- (2008) H. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Robust detection protocols for uncertain introductions of invasive species
- (2007) L. Joe Moffitt et al. JOURNAL OF ENVIRONMENTAL MANAGEMENT
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