Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
出版年份 2017 全文链接
标题
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
作者
关键词
-
出版物
ISME Journal
Volume 11, Issue 12, Pages 2639-2643
出版商
Springer Nature
发表日期
2017-07-21
DOI
10.1038/ismej.2017.119
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters
- (2017) David M Needham et al. ISME Journal
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions
- (2016) Nielson T. Baxter et al. Genome Medicine
- Editorial: New Insights into Microbial Ecology through Subtle Nucleotide Variation
- (2016) A. Murat Eren et al. Frontiers in Microbiology
- Open-Source Sequence Clustering Methods Improve the State Of the Art
- (2016) Evguenia Kopylova et al. mSystems
- Error filtering, pair assembly and error correction for next-generation sequencing reads
- (2015) Robert C. Edgar et al. BIOINFORMATICS
- Temporal and spatial variation of the human microbiota during pregnancy
- (2015) Daniel B. DiGiulio et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Eukaryotic plankton diversity in the sunlit ocean
- (2015) C. de Vargas et al. SCIENCE
- De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
- (2015) Sarah L. Westcott et al. PeerJ
- Swarm v2: highly-scalable and high-resolution amplicon clustering
- (2015) Frédéric Mahé et al. PeerJ
- Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution
- (2014) Mikhail Tikhonov et al. ISME Journal
- Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
- (2014) A Murat Eren et al. ISME Journal
- Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
- (2014) Jai Ram Rideout et al. PeerJ
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
- (2013) James J. Kozich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
- (2013) A. Murat Eren et al. Methods in Ecology and Evolution
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- Removing Noise From Pyrosequenced Amplicons
- (2011) Christopher Quince et al. BMC BIOINFORMATICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started