Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
出版年份 2018 全文链接
标题
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
作者
关键词
-
出版物
Microbiome
Volume 6, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-05-17
DOI
10.1186/s40168-018-0470-z
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Human embryos: Collect reliable data on embryo selection
- (2017) Charis Thompson NATURE
- Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
- (2017) Alexander Sczyrba et al. NATURE METHODS
- Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
- (2016) D. Lee Taylor et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences
- (2016) Vinita Deshpande et al. MYCOLOGIA
- Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
- (2016) Daryl M Gohl et al. NATURE BIOTECHNOLOGY
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing
- (2016) Dieter M. Tourlousse et al. NUCLEIC ACIDS RESEARCH
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking
- (2016) Nicholas A. Bokulich et al. mSystems
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- 16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets
- (2015) Nikhil Chaudhary et al. PLoS One
- Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities
- (2013) Nicholas A. Bokulich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome
- (2013) Corinne Ferrier Maurice et al. CELL
- Naïve Bayesian Classifiers with Multinomial Models for rRNA Taxonomic Assignment
- (2013) Kuan-Liang Liu et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Towards a unified paradigm for sequence-based identification of fungi
- (2013) Urmas Kõljalg et al. MOLECULAR ECOLOGY
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
- (2012) Katarina Ihrmark et al. FEMS MICROBIOLOGY ECOLOGY
- Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
- (2012) David A W Soergel et al. ISME Journal
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- A framework for human microbiome research
- (2012) NATURE
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms
- (2012) Yemin Lan et al. PLoS One
- CREST – Classification Resources for Environmental Sequence Tags
- (2012) Anders Lanzén et al. PLoS One
- An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
- (2011) Daniel McDonald et al. ISME Journal
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
- (2008) Z. Liu et al. NUCLEIC ACIDS RESEARCH
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