Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates
出版年份 2015 全文链接
标题
Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates
作者
关键词
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出版物
Molecular Ecology Resources
Volume 16, Issue 5, Pages 1240-1254
出版商
Wiley
发表日期
2015-11-19
DOI
10.1111/1755-0998.12488
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Early detection of eukaryotic communities from marine biofilm using high-throughput sequencing: an assessment of different sampling devices
- (2015) Xavier Pochon et al. BIOFOULING
- Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
- (2015) Philip Francis Thomsen et al. BIOLOGICAL CONSERVATION
- Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data
- (2015) Joana Amorim Visco et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Accurate assessment of the impact of salmon farming on benthic sediment enrichment using foraminiferal metabarcoding
- (2015) X. Pochon et al. MARINE POLLUTION BULLETIN
- Metabarcoding approach for the ballast water surveillance – An advantageous solution or an awkward challenge?
- (2015) Anastasija Zaiko et al. MARINE POLLUTION BULLETIN
- Eukaryotic plankton diversity in the sunlit ocean
- (2015) C. de Vargas et al. SCIENCE
- The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews
- (2015) Thomas C. Giarla et al. SYSTEMATIC BIOLOGY
- Molecular Barcoding of Aquatic Oligochaetes: Implications for Biomonitoring
- (2015) Régis Vivien et al. PLoS One
- High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems
- (2015) Franck Lejzerowicz et al. Scientific Reports
- DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
- (2014) B. E. Deagle et al. Biology Letters
- Using metabarcoding to ask if easily collected soil and leaf-litter samples can be used as a general biodiversity indicator
- (2014) Chenxue Yang et al. ECOLOGICAL INDICATORS
- Successional Change in Microbial Communities of Benthic Phormidium-Dominated Biofilms
- (2014) Katie A. Brasell et al. MICROBIAL ECOLOGY
- Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias
- (2014) Laurence J. Clarke et al. Molecular Ecology Resources
- Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities
- (2014) Jan Pawlowski et al. Molecular Ecology Resources
- Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics
- (2014) J. Gibson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Harnessing DNA to improve environmental management
- (2014) R. P. Kelly et al. SCIENCE
- Does DNA barcoding improve performance of traditional stream bioassessment metrics?
- (2014) Eric D. Stein et al. Freshwater Science
- A next-generation sequencing approach to river biomonitoring using benthic diatoms
- (2014) Lenaïg Kermarrec et al. Freshwater Science
- Environmental bio-monitoring with high-throughput sequencing
- (2013) J. Wang et al. BRIEFINGS IN BIOINFORMATICS
- Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
- (2013) Yinqiu Ji et al. ECOLOGY LETTERS
- A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
- (2013) Matthieu Leray et al. Frontiers in Zoology
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys
- (2013) J. Geller et al. Molecular Ecology Resources
- DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet
- (2013) M. De Barba et al. Molecular Ecology Resources
- Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?
- (2013) Bruce E. Deagle et al. Molecular Ecology Resources
- Molecular genetic tools for environmental monitoring of New Zealand's aquatic habitats, past, present and the future
- (2013) SA Wood et al. NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH
- A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing
- (2013) John E. McCormack et al. PLoS One
- Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of International Marine Pests
- (2013) Xavier Pochon et al. PLoS One
- Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages
- (2013) Penelope K. Lindeque et al. PLoS One
- Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification
- (2013) Xin Zhou et al. GigaScience
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Genetic diversity in widespread species is not congruent with species richness in alpine plant communities
- (2012) Pierre Taberlet et al. ECOLOGY LETTERS
- Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing
- (2012) DONALD J. BAIRD et al. MOLECULAR ECOLOGY
- Next-generation sequencing technologies for environmental DNA research
- (2012) SHADI SHOKRALLA et al. MOLECULAR ECOLOGY
- Performance comparison of benchtop high-throughput sequencing platforms
- (2012) Nicholas J Loman et al. NATURE BIOTECHNOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Sequencing our way towards understanding global eukaryotic biodiversity
- (2012) Holly M. Bik et al. TRENDS IN ECOLOGY & EVOLUTION
- CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
- (2012) Jan Pawlowski et al. PLOS BIOLOGY
- Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
- (2012) Mehrdad Hajibabaei et al. BMC ECOLOGY
- Targeted enrichment of genomic DNA regions for next-generation sequencing
- (2011) F. Mertes et al. Briefings in Functional Genomics
- Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?
- (2011) Bernard W. Sweeney et al. JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY
- Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity
- (2011) KENNETH ANDERSEN et al. MOLECULAR ECOLOGY
- Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
- (2011) Mehrdad Hajibabaei et al. PLoS One
- Metagenomic Analyses: Past and Future Trends
- (2010) Carola Simon et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
- (2010) Murray P Cox et al. BMC BIOINFORMATICS
- Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA
- (2010) Anthony A Chariton et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
- (2010) S. CREER et al. MOLECULAR ECOLOGY
- Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate
- (2010) J. H. SØNSTEBØ et al. Molecular Ecology Resources
- Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces
- (2010) MATT R. K. ZEALE et al. Molecular Ecology Resources
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
- (2010) Marcus J. Claesson et al. NUCLEIC ACIDS RESEARCH
- Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products
- (2010) Tomislav Maricic et al. PLoS One
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces
- (2009) BRUCE E. DEAGLE et al. MOLECULAR ECOLOGY
- Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure
- (2009) DOROTA L. PORAZINSKA et al. Molecular Ecology Resources
- Genomics: catch me if you can
- (2009) Nathan Blow NATURE METHODS
- A universal DNA mini-barcode for biodiversity analysis
- (2008) Isabelle Meusnier et al. BMC GENOMICS
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