Metabolomic and transcriptomic changes underlying cold and anaerobic stresses after storage of table grapes

Combinatorial Regulation of Stilbene Synthase Genes by WRKY and MYB Transcription Factors in Grapevine (Vitis vinifera L.)

(2018) Alessandro Vannozzi et al.   PLANT AND CELL PHYSIOLOGY

Differential Expression of VvLOXA Diversifies C6 Volatile Profiles in Some Vitis vinifera Table Grape Cultivars

(2017) Xu Qian et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Dissecting the Biochemical and Transcriptomic Effects of a Locally Applied Heat Treatment on Developing Cabernet Sauvignon Grape Berries

(2017) Fatma Lecourieux et al.   Frontiers in Plant Science

Drawing Links from Transcriptome to Metabolites: The Evolution of Aroma in the Ripening Berry of Moscato Bianco (Vitis vinifera L.)

(2017) Laura Costantini et al.   Frontiers in Plant Science

Uneven distribution of flavour components in tablegrape berries

(2016) I. Maoz et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation

(2016) Darren Chern Jan Wong et al.   DNA RESEARCH

Effect of Exogenous Abscisic Acid and Methyl Jasmonate on Anthocyanin Composition, Fatty Acids, and Volatile Compounds of Cabernet Sauvignon (Vitis vinifera L.) Grape Berries

(2016) Yan-Lun Ju et al.   MOLECULES

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Expression Profiles and DNA-Binding Affinity of Five ERF Genes in Bunches of Vitis vinifera cv. Cardinal Treated with High Levels of CO2 at Low Temperature

(2016) Irene Romero et al.   Frontiers in Plant Science

Low Temperature and Short-Term High-CO2 Treatment in Postharvest Storage of Table Grapes at Two Maturity Stages: Effects on Transcriptome Profiling

(2016) Raquel Rosales et al.   Frontiers in Plant Science

Functional role of DREB and ERF transcription factors: regulating stress-responsive network in plants

(2015) Shazia Rehman et al.   ACTA PHYSIOLOGIAE PLANTARUM

Chemistry and Biology of Resveratrol-Derived Natural Products

(2015) Mitchell H. Keylor et al.   CHEMICAL REVIEWS

Characterization of Non-Anthocyanic Flavonoids in Some Hybrid Red Grape Extracts Potentially Interesting for Industrial Uses

(2015) Mirko De Rosso et al.   MOLECULES

MetaboAnalyst 3.0—making metabolomics more meaningful

(2015) Jianguo Xia et al.   NUCLEIC ACIDS RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

(2014) Nicola Vitulo et al.   BMC PLANT BIOLOGY

Grape contains 4 ICE genes whose expression includes alternative polyadenylation, leading to transcripts encoding at least 7 different ICE proteins

(2014) M. Atikur Rahman et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

The gene family of dehydration responsive element-binding transcription factors in grape (Vitis vinifera): genome-wide identification and analysis, expression profiles, and involvement in abiotic stress resistance

(2014) Tao Zhao et al.   MOLECULAR BIOLOGY REPORTS

Is stored malate the quantitatively most important substrate utilised by respiration and ethanolic fermentation in grape berry pericarp during ripening?

(2014) Franco Famiani et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Characterisation of genes encoding key enzymes involved in sugar metabolism of apple fruit in controlled atmosphere storage

(2013) Zhu Zhu et al.   FOOD CHEMISTRY

An innovative approach to grape metabolomics: stilbene profiling by suspect screening analysis

(2013) Riccardo Flamini et al.   Metabolomics

Advances in Fruit Aroma Volatile Research

(2013) Muna El Hadi et al.   MOLECULES

The R2R3-MYB Transcription Factors MYB14 and MYB15 Regulate Stilbene Biosynthesis in Vitis vinifera

(2013) J. Holl et al.   PLANT CELL

Functional roles of flavonoids in photoprotection: New evidence, lessons from the past

(2013) Giovanni Agati et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome Wide Transcriptional Profile Analysis of Vitis amurensis and Vitis vinifera in Response to Cold Stress

(2013) Haiping Xin et al.   PLoS One

Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses

(2012) Alessandro Vannozzi et al.   BMC PLANT BIOLOGY

The Chemical Interactions Underlying Tomato Flavor Preferences

(2012) Denise Tieman et al.   CURRENT BIOLOGY

Isolation and characterization of two hydroperoxide lyase genes from grape berries

(2012) Bao-Qing Zhu et al.   MOLECULAR BIOLOGY REPORTS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

VpWRKY3, a biotic and abiotic stress-related transcription factor from the Chinese wild Vitis pseudoreticulata

(2012) Ziguo Zhu et al.   PLANT CELL REPORTS

Arabidopsis WRKY33 Is a Key Transcriptional Regulator of Hormonal and Metabolic Responses toward Botrytis cinerea Infection

(2012) R. P. Birkenbihl et al.   PLANT PHYSIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera

(2011) Francesco Licausi et al.   BMC GENOMICS

Rapid and Efficient Isolation of High Quality Nucleic Acids from Plant Tissues Rich in Polyphenols and Polysaccharides

(2011) Reza Heidari Japelaghi et al.   MOLECULAR BIOTECHNOLOGY

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

Identification of the lipoxygenase gene family fromVitis viniferaand biochemical characterisation of two 13-lipoxygenases expressed in grape berries of Sauvignon Blanc

(2010) Andriy Podolyan et al.   FUNCTIONAL PLANT BIOLOGY

Structures of Two Novel Trimeric Stilbenes Obtained by Horseradish Peroxidase Catalyzed Biotransformation oftrans-Resveratrol and (−)-ε-Viniferin

(2010) Andrea Wilkens et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Taste and aroma of fresh and stored mandarins

(2010) Zipora Tietel et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana

(2010) Francesco Licausi et al.   PLANT JOURNAL

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Phylogenetic analysis, structural evolution and functional divergence of the 12-oxo-phytodienoate acid reductase gene family in plants

(2009) Wenyan Li et al.   BMC EVOLUTIONARY BIOLOGY

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

(2009) J.-G. Joung et al.   PLANT PHYSIOLOGY

Genome-wide analysis of the putative AP2/ERF family genes in Vitis vinifera

(2009) Jing Zhuang et al.   SCIENTIA HORTICULTURAE

Bioproduction of resveratrol and stilbene derivatives by plant cells and microorganisms

(2009) David Donnez et al.   TRENDS IN BIOTECHNOLOGY

Antiproliferative activities of resveratrol and related compounds in human hepatocyte derived HepG2 cells are associated with biochemical cell disturbance revealed by fluorescence analyses

(2008) Didier Colin et al.   BIOCHIMIE

Volatiles of grape berries evaluated at the germplasm level by headspace-SPME with GC–MS

(2008) Chunxiang Yang et al.   FOOD CHEMISTRY

Salicylic acid activates phenylalanine ammonia-lyase in grape berry in response to high temperature stress

(2008) Peng-Fei Wen et al.   PLANT GROWTH REGULATION

Manipulation of VvAdh to investigate its function in grape berry development

(2007) Laurent Torregrosa et al.   PLANT SCIENCE